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BABEL: using deep learning to translate between single-cell datasets
Recent advances in sequencing and barcoding technologies have enabled researchers to simultaneously profile gene expression, chromatin accessibility, and/or protein levels in single cells. However, these multiomic techniques often pose technical and financial barriers that limit their practicality....
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8119457/ https://www.ncbi.nlm.nih.gov/pubmed/33986447 http://dx.doi.org/10.1038/s42003-021-02135-9 |
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author | Inglis, George Andrew S. |
author_facet | Inglis, George Andrew S. |
author_sort | Inglis, George Andrew S. |
collection | PubMed |
description | Recent advances in sequencing and barcoding technologies have enabled researchers to simultaneously profile gene expression, chromatin accessibility, and/or protein levels in single cells. However, these multiomic techniques often pose technical and financial barriers that limit their practicality. Kevin Wu and colleagues recently developed BABEL, a deep learning algorithm that can effectively translate between transcriptomic and chromatin profiles in single cells, thereby enabling researchers to perform multiomic analyses from an individual dataset. |
format | Online Article Text |
id | pubmed-8119457 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-81194572021-05-14 BABEL: using deep learning to translate between single-cell datasets Inglis, George Andrew S. Commun Biol Research Highlight Recent advances in sequencing and barcoding technologies have enabled researchers to simultaneously profile gene expression, chromatin accessibility, and/or protein levels in single cells. However, these multiomic techniques often pose technical and financial barriers that limit their practicality. Kevin Wu and colleagues recently developed BABEL, a deep learning algorithm that can effectively translate between transcriptomic and chromatin profiles in single cells, thereby enabling researchers to perform multiomic analyses from an individual dataset. Nature Publishing Group UK 2021-05-13 /pmc/articles/PMC8119457/ /pubmed/33986447 http://dx.doi.org/10.1038/s42003-021-02135-9 Text en © Springer Nature Limited 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Highlight Inglis, George Andrew S. BABEL: using deep learning to translate between single-cell datasets |
title | BABEL: using deep learning to translate between single-cell datasets |
title_full | BABEL: using deep learning to translate between single-cell datasets |
title_fullStr | BABEL: using deep learning to translate between single-cell datasets |
title_full_unstemmed | BABEL: using deep learning to translate between single-cell datasets |
title_short | BABEL: using deep learning to translate between single-cell datasets |
title_sort | babel: using deep learning to translate between single-cell datasets |
topic | Research Highlight |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8119457/ https://www.ncbi.nlm.nih.gov/pubmed/33986447 http://dx.doi.org/10.1038/s42003-021-02135-9 |
work_keys_str_mv | AT inglisgeorgeandrews babelusingdeeplearningtotranslatebetweensinglecelldatasets |