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BABEL: using deep learning to translate between single-cell datasets

Recent advances in sequencing and barcoding technologies have enabled researchers to simultaneously profile gene expression, chromatin accessibility, and/or protein levels in single cells. However, these multiomic techniques often pose technical and financial barriers that limit their practicality....

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Detalles Bibliográficos
Autor principal: Inglis, George Andrew S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8119457/
https://www.ncbi.nlm.nih.gov/pubmed/33986447
http://dx.doi.org/10.1038/s42003-021-02135-9
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author Inglis, George Andrew S.
author_facet Inglis, George Andrew S.
author_sort Inglis, George Andrew S.
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description Recent advances in sequencing and barcoding technologies have enabled researchers to simultaneously profile gene expression, chromatin accessibility, and/or protein levels in single cells. However, these multiomic techniques often pose technical and financial barriers that limit their practicality. Kevin Wu and colleagues recently developed BABEL, a deep learning algorithm that can effectively translate between transcriptomic and chromatin profiles in single cells, thereby enabling researchers to perform multiomic analyses from an individual dataset.
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spelling pubmed-81194572021-05-14 BABEL: using deep learning to translate between single-cell datasets Inglis, George Andrew S. Commun Biol Research Highlight Recent advances in sequencing and barcoding technologies have enabled researchers to simultaneously profile gene expression, chromatin accessibility, and/or protein levels in single cells. However, these multiomic techniques often pose technical and financial barriers that limit their practicality. Kevin Wu and colleagues recently developed BABEL, a deep learning algorithm that can effectively translate between transcriptomic and chromatin profiles in single cells, thereby enabling researchers to perform multiomic analyses from an individual dataset. Nature Publishing Group UK 2021-05-13 /pmc/articles/PMC8119457/ /pubmed/33986447 http://dx.doi.org/10.1038/s42003-021-02135-9 Text en © Springer Nature Limited 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research Highlight
Inglis, George Andrew S.
BABEL: using deep learning to translate between single-cell datasets
title BABEL: using deep learning to translate between single-cell datasets
title_full BABEL: using deep learning to translate between single-cell datasets
title_fullStr BABEL: using deep learning to translate between single-cell datasets
title_full_unstemmed BABEL: using deep learning to translate between single-cell datasets
title_short BABEL: using deep learning to translate between single-cell datasets
title_sort babel: using deep learning to translate between single-cell datasets
topic Research Highlight
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8119457/
https://www.ncbi.nlm.nih.gov/pubmed/33986447
http://dx.doi.org/10.1038/s42003-021-02135-9
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