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Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs

The hepatotoxic potential of drugs is one of the main reasons why a number of drugs never reach the market or have to be withdrawn from the market. Therefore, the evaluation of the hepatotoxic potential of drugs is an important part of the drug development process. The aim of this work was to evalua...

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Detalles Bibliográficos
Autores principales: Drgan, Viktor, Bajželj, Benjamin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8123051/
https://www.ncbi.nlm.nih.gov/pubmed/33923145
http://dx.doi.org/10.3390/ijms22094443
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author Drgan, Viktor
Bajželj, Benjamin
author_facet Drgan, Viktor
Bajželj, Benjamin
author_sort Drgan, Viktor
collection PubMed
description The hepatotoxic potential of drugs is one of the main reasons why a number of drugs never reach the market or have to be withdrawn from the market. Therefore, the evaluation of the hepatotoxic potential of drugs is an important part of the drug development process. The aim of this work was to evaluate the relative abilities of different supervised self-organizing algorithms in classifying the hepatotoxic potential of drugs. Two modifications of standard counter-propagation training algorithms were proposed to achieve good separation of clusters on the self-organizing map. A series of optimizations were performed using genetic algorithm to select models developed with counter-propagation neural networks, X-Y fused networks, and the two newly proposed algorithms. The cluster separations achieved by the different algorithms were evaluated using a simple measure presented in this paper. Both proposed algorithms showed a better formation of clusters compared to the standard counter-propagation algorithm. The X-Y fused neural network confirmed its high ability to form well-separated clusters. Nevertheless, one of the proposed algorithms came close to its clustering results, which also resulted in a similar number of selected models.
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spelling pubmed-81230512021-05-16 Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs Drgan, Viktor Bajželj, Benjamin Int J Mol Sci Article The hepatotoxic potential of drugs is one of the main reasons why a number of drugs never reach the market or have to be withdrawn from the market. Therefore, the evaluation of the hepatotoxic potential of drugs is an important part of the drug development process. The aim of this work was to evaluate the relative abilities of different supervised self-organizing algorithms in classifying the hepatotoxic potential of drugs. Two modifications of standard counter-propagation training algorithms were proposed to achieve good separation of clusters on the self-organizing map. A series of optimizations were performed using genetic algorithm to select models developed with counter-propagation neural networks, X-Y fused networks, and the two newly proposed algorithms. The cluster separations achieved by the different algorithms were evaluated using a simple measure presented in this paper. Both proposed algorithms showed a better formation of clusters compared to the standard counter-propagation algorithm. The X-Y fused neural network confirmed its high ability to form well-separated clusters. Nevertheless, one of the proposed algorithms came close to its clustering results, which also resulted in a similar number of selected models. MDPI 2021-04-24 /pmc/articles/PMC8123051/ /pubmed/33923145 http://dx.doi.org/10.3390/ijms22094443 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Drgan, Viktor
Bajželj, Benjamin
Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs
title Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs
title_full Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs
title_fullStr Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs
title_full_unstemmed Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs
title_short Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs
title_sort application of supervised som algorithms in predicting the hepatotoxic potential of drugs
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8123051/
https://www.ncbi.nlm.nih.gov/pubmed/33923145
http://dx.doi.org/10.3390/ijms22094443
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