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Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs
The hepatotoxic potential of drugs is one of the main reasons why a number of drugs never reach the market or have to be withdrawn from the market. Therefore, the evaluation of the hepatotoxic potential of drugs is an important part of the drug development process. The aim of this work was to evalua...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8123051/ https://www.ncbi.nlm.nih.gov/pubmed/33923145 http://dx.doi.org/10.3390/ijms22094443 |
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author | Drgan, Viktor Bajželj, Benjamin |
author_facet | Drgan, Viktor Bajželj, Benjamin |
author_sort | Drgan, Viktor |
collection | PubMed |
description | The hepatotoxic potential of drugs is one of the main reasons why a number of drugs never reach the market or have to be withdrawn from the market. Therefore, the evaluation of the hepatotoxic potential of drugs is an important part of the drug development process. The aim of this work was to evaluate the relative abilities of different supervised self-organizing algorithms in classifying the hepatotoxic potential of drugs. Two modifications of standard counter-propagation training algorithms were proposed to achieve good separation of clusters on the self-organizing map. A series of optimizations were performed using genetic algorithm to select models developed with counter-propagation neural networks, X-Y fused networks, and the two newly proposed algorithms. The cluster separations achieved by the different algorithms were evaluated using a simple measure presented in this paper. Both proposed algorithms showed a better formation of clusters compared to the standard counter-propagation algorithm. The X-Y fused neural network confirmed its high ability to form well-separated clusters. Nevertheless, one of the proposed algorithms came close to its clustering results, which also resulted in a similar number of selected models. |
format | Online Article Text |
id | pubmed-8123051 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81230512021-05-16 Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs Drgan, Viktor Bajželj, Benjamin Int J Mol Sci Article The hepatotoxic potential of drugs is one of the main reasons why a number of drugs never reach the market or have to be withdrawn from the market. Therefore, the evaluation of the hepatotoxic potential of drugs is an important part of the drug development process. The aim of this work was to evaluate the relative abilities of different supervised self-organizing algorithms in classifying the hepatotoxic potential of drugs. Two modifications of standard counter-propagation training algorithms were proposed to achieve good separation of clusters on the self-organizing map. A series of optimizations were performed using genetic algorithm to select models developed with counter-propagation neural networks, X-Y fused networks, and the two newly proposed algorithms. The cluster separations achieved by the different algorithms were evaluated using a simple measure presented in this paper. Both proposed algorithms showed a better formation of clusters compared to the standard counter-propagation algorithm. The X-Y fused neural network confirmed its high ability to form well-separated clusters. Nevertheless, one of the proposed algorithms came close to its clustering results, which also resulted in a similar number of selected models. MDPI 2021-04-24 /pmc/articles/PMC8123051/ /pubmed/33923145 http://dx.doi.org/10.3390/ijms22094443 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Drgan, Viktor Bajželj, Benjamin Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs |
title | Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs |
title_full | Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs |
title_fullStr | Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs |
title_full_unstemmed | Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs |
title_short | Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs |
title_sort | application of supervised som algorithms in predicting the hepatotoxic potential of drugs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8123051/ https://www.ncbi.nlm.nih.gov/pubmed/33923145 http://dx.doi.org/10.3390/ijms22094443 |
work_keys_str_mv | AT drganviktor applicationofsupervisedsomalgorithmsinpredictingthehepatotoxicpotentialofdrugs AT bajzeljbenjamin applicationofsupervisedsomalgorithmsinpredictingthehepatotoxicpotentialofdrugs |