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Worldwide variation of the COL14A1 gene is shaped by genetic drift rather than selective pressure

BACKGROUND: The aim of this study is to analyze the worldwide distribution of SNP rs4870723 in COL14A1 gene to check if there are significant genetic differences among different populations and to test if the gene is a trait under selection. METHODS: Genomic DNA was extracted from 69 unrelated indiv...

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Autores principales: Calò, Carla M., Onali, Federico, Robledo, Renato, Flore, Laura, Massidda, Myosotis, Francalacci, Paolo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8123734/
https://www.ncbi.nlm.nih.gov/pubmed/33650783
http://dx.doi.org/10.1002/mgg3.1629
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author Calò, Carla M.
Onali, Federico
Robledo, Renato
Flore, Laura
Massidda, Myosotis
Francalacci, Paolo
author_facet Calò, Carla M.
Onali, Federico
Robledo, Renato
Flore, Laura
Massidda, Myosotis
Francalacci, Paolo
author_sort Calò, Carla M.
collection PubMed
description BACKGROUND: The aim of this study is to analyze the worldwide distribution of SNP rs4870723 in COL14A1 gene to check if there are significant genetic differences among different populations and to test if the gene is a trait under selection. METHODS: Genomic DNA was extracted from 69 unrelated individuals from Sardinia and genotyped for SNP rs4870723. Data were compared with 26 different populations, clustered in 5 super‐populations, from the public 1000 genomes database. Allele frequency and heterozygosity were calculated with Genepop. The Hardy–Weinberg equilibrium and pairwise population differentiation through analysis of molecular variance (AMOVA FST) were determined with Arlequin. RESULTS: Allele frequencies of COL14A1 rs4870723 were compared in 27 populations clustered in 5 super‐populations. All populations were in the Hardy–Weinberg equilibrium. In almost all populations, allele C was the most frequent allele, reaching the highest values in East Asia. The 27 populations showed an appreciable structure, with significant differences observed between European, African, and Asian populations. CONCLUSION: Significant differences were observed in the rs4870723 SNP distribution among the populations studied. However, we found no evidence for a selective pressure. Rather, the differentiation among the populations is likely the result of founder effect, genetic drift, and cultural factors, all events known to establish and maintain genetic diversity between populations.
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spelling pubmed-81237342021-05-21 Worldwide variation of the COL14A1 gene is shaped by genetic drift rather than selective pressure Calò, Carla M. Onali, Federico Robledo, Renato Flore, Laura Massidda, Myosotis Francalacci, Paolo Mol Genet Genomic Med Original Articles BACKGROUND: The aim of this study is to analyze the worldwide distribution of SNP rs4870723 in COL14A1 gene to check if there are significant genetic differences among different populations and to test if the gene is a trait under selection. METHODS: Genomic DNA was extracted from 69 unrelated individuals from Sardinia and genotyped for SNP rs4870723. Data were compared with 26 different populations, clustered in 5 super‐populations, from the public 1000 genomes database. Allele frequency and heterozygosity were calculated with Genepop. The Hardy–Weinberg equilibrium and pairwise population differentiation through analysis of molecular variance (AMOVA FST) were determined with Arlequin. RESULTS: Allele frequencies of COL14A1 rs4870723 were compared in 27 populations clustered in 5 super‐populations. All populations were in the Hardy–Weinberg equilibrium. In almost all populations, allele C was the most frequent allele, reaching the highest values in East Asia. The 27 populations showed an appreciable structure, with significant differences observed between European, African, and Asian populations. CONCLUSION: Significant differences were observed in the rs4870723 SNP distribution among the populations studied. However, we found no evidence for a selective pressure. Rather, the differentiation among the populations is likely the result of founder effect, genetic drift, and cultural factors, all events known to establish and maintain genetic diversity between populations. John Wiley and Sons Inc. 2021-03-02 /pmc/articles/PMC8123734/ /pubmed/33650783 http://dx.doi.org/10.1002/mgg3.1629 Text en © 2021 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Original Articles
Calò, Carla M.
Onali, Federico
Robledo, Renato
Flore, Laura
Massidda, Myosotis
Francalacci, Paolo
Worldwide variation of the COL14A1 gene is shaped by genetic drift rather than selective pressure
title Worldwide variation of the COL14A1 gene is shaped by genetic drift rather than selective pressure
title_full Worldwide variation of the COL14A1 gene is shaped by genetic drift rather than selective pressure
title_fullStr Worldwide variation of the COL14A1 gene is shaped by genetic drift rather than selective pressure
title_full_unstemmed Worldwide variation of the COL14A1 gene is shaped by genetic drift rather than selective pressure
title_short Worldwide variation of the COL14A1 gene is shaped by genetic drift rather than selective pressure
title_sort worldwide variation of the col14a1 gene is shaped by genetic drift rather than selective pressure
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8123734/
https://www.ncbi.nlm.nih.gov/pubmed/33650783
http://dx.doi.org/10.1002/mgg3.1629
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