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The low expression of NUP62CL indicates good prognosis and high level of immune infiltration in lung adenocarcinoma

A primary factor in tumor morbidity and mortality, lung adenocarcinoma (LUAD) is known to be a major subtype of lung cancer, having the lowest survival rate among all other cancers. Using The Cancer Genome Atlas (TCGA) database the relationship between the immune infiltrate and the NUP62CL was explo...

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Autores principales: Ren, Shiqi, Wang, Wei, Zhang, Chenlin, Sun, Yidan, Sun, Mengjing, Wang, Yingjing, Zhang, Xiaojing, Lu, Bing, Yao, Lanlan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8124116/
https://www.ncbi.nlm.nih.gov/pubmed/33934535
http://dx.doi.org/10.1002/cam4.3877
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author Ren, Shiqi
Wang, Wei
Zhang, Chenlin
Sun, Yidan
Sun, Mengjing
Wang, Yingjing
Zhang, Xiaojing
Lu, Bing
Yao, Lanlan
author_facet Ren, Shiqi
Wang, Wei
Zhang, Chenlin
Sun, Yidan
Sun, Mengjing
Wang, Yingjing
Zhang, Xiaojing
Lu, Bing
Yao, Lanlan
author_sort Ren, Shiqi
collection PubMed
description A primary factor in tumor morbidity and mortality, lung adenocarcinoma (LUAD) is known to be a major subtype of lung cancer, having the lowest survival rate among all other cancers. Using The Cancer Genome Atlas (TCGA) database the relationship between the immune infiltrate and the NUP62CL was explored and the value of the NUP62CL expression in the prognosis and diagnosis LUAD was examined. Using the logistic regression and the Wilcoxon signed‐rank test the relationship between the NUP62CL and the clinico‐pathological features was analyzed. There was a significant correlation between the clinical stage (p = 0.005), the N (p = 0.004), and the decreased expression of NUP62CL. The prognosis of LUAD with high NUP62CL expression was revealed to be worse than that with low NUP62CL expression (p < 0.001) by the Kaplan‐Meier survival analysis. The potentiality of NUP62CL to be a significant factor of prognosis for LUAD was indicated by the analyses of the multivariate and the univariate Cox regression models. In LUAD, the crucial role of recombination and maintenance of telomere as a significant pathway for NUP62CL was suggested by the Gene Set Enrichment Analysis (GSEA). To analyze the correlation between the genes and the tumor infiltrating immune cells the CIBERSORT was used. Moreover the positive correlation with the NUP62CL expression in LUAD of the infiltration level of the tumor infiltrating B lymphocytes and memory CD4+ T cells was exhibited by CIBERSORT. Therefore, NUP62CL may be a new valuable prognostic indicator for LUAD.
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spelling pubmed-81241162021-05-21 The low expression of NUP62CL indicates good prognosis and high level of immune infiltration in lung adenocarcinoma Ren, Shiqi Wang, Wei Zhang, Chenlin Sun, Yidan Sun, Mengjing Wang, Yingjing Zhang, Xiaojing Lu, Bing Yao, Lanlan Cancer Med Cancer Biology A primary factor in tumor morbidity and mortality, lung adenocarcinoma (LUAD) is known to be a major subtype of lung cancer, having the lowest survival rate among all other cancers. Using The Cancer Genome Atlas (TCGA) database the relationship between the immune infiltrate and the NUP62CL was explored and the value of the NUP62CL expression in the prognosis and diagnosis LUAD was examined. Using the logistic regression and the Wilcoxon signed‐rank test the relationship between the NUP62CL and the clinico‐pathological features was analyzed. There was a significant correlation between the clinical stage (p = 0.005), the N (p = 0.004), and the decreased expression of NUP62CL. The prognosis of LUAD with high NUP62CL expression was revealed to be worse than that with low NUP62CL expression (p < 0.001) by the Kaplan‐Meier survival analysis. The potentiality of NUP62CL to be a significant factor of prognosis for LUAD was indicated by the analyses of the multivariate and the univariate Cox regression models. In LUAD, the crucial role of recombination and maintenance of telomere as a significant pathway for NUP62CL was suggested by the Gene Set Enrichment Analysis (GSEA). To analyze the correlation between the genes and the tumor infiltrating immune cells the CIBERSORT was used. Moreover the positive correlation with the NUP62CL expression in LUAD of the infiltration level of the tumor infiltrating B lymphocytes and memory CD4+ T cells was exhibited by CIBERSORT. Therefore, NUP62CL may be a new valuable prognostic indicator for LUAD. John Wiley and Sons Inc. 2021-05-02 /pmc/articles/PMC8124116/ /pubmed/33934535 http://dx.doi.org/10.1002/cam4.3877 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Cancer Biology
Ren, Shiqi
Wang, Wei
Zhang, Chenlin
Sun, Yidan
Sun, Mengjing
Wang, Yingjing
Zhang, Xiaojing
Lu, Bing
Yao, Lanlan
The low expression of NUP62CL indicates good prognosis and high level of immune infiltration in lung adenocarcinoma
title The low expression of NUP62CL indicates good prognosis and high level of immune infiltration in lung adenocarcinoma
title_full The low expression of NUP62CL indicates good prognosis and high level of immune infiltration in lung adenocarcinoma
title_fullStr The low expression of NUP62CL indicates good prognosis and high level of immune infiltration in lung adenocarcinoma
title_full_unstemmed The low expression of NUP62CL indicates good prognosis and high level of immune infiltration in lung adenocarcinoma
title_short The low expression of NUP62CL indicates good prognosis and high level of immune infiltration in lung adenocarcinoma
title_sort low expression of nup62cl indicates good prognosis and high level of immune infiltration in lung adenocarcinoma
topic Cancer Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8124116/
https://www.ncbi.nlm.nih.gov/pubmed/33934535
http://dx.doi.org/10.1002/cam4.3877
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