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Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time

(Peri)centromeric repetitive sequences and, more specifically, satellite DNA (satDNA) sequences, constitute a major human genomic component. SatDNA sequences can vary on a large number of features, including nucleotide composition, complexity, and abundance. Several satDNA families have been identif...

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Autores principales: Lopes, Mariana, Louzada, Sandra, Gama-Carvalho, Margarida, Chaves, Raquel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8125562/
https://www.ncbi.nlm.nih.gov/pubmed/33946766
http://dx.doi.org/10.3390/ijms22094707
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author Lopes, Mariana
Louzada, Sandra
Gama-Carvalho, Margarida
Chaves, Raquel
author_facet Lopes, Mariana
Louzada, Sandra
Gama-Carvalho, Margarida
Chaves, Raquel
author_sort Lopes, Mariana
collection PubMed
description (Peri)centromeric repetitive sequences and, more specifically, satellite DNA (satDNA) sequences, constitute a major human genomic component. SatDNA sequences can vary on a large number of features, including nucleotide composition, complexity, and abundance. Several satDNA families have been identified and characterized in the human genome through time, albeit at different speeds. Human satDNA families present a high degree of sub-variability, leading to the definition of various subfamilies with different organization and clustered localization. Evolution of satDNA analysis has enabled the progressive characterization of satDNA features. Despite recent advances in the sequencing of centromeric arrays, comprehensive genomic studies to assess their variability are still required to provide accurate and proportional representation of satDNA (peri)centromeric/acrocentric short arm sequences. Approaches combining multiple techniques have been successfully applied and seem to be the path to follow for generating integrated knowledge in the promising field of human satDNA biology.
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spelling pubmed-81255622021-05-17 Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time Lopes, Mariana Louzada, Sandra Gama-Carvalho, Margarida Chaves, Raquel Int J Mol Sci Review (Peri)centromeric repetitive sequences and, more specifically, satellite DNA (satDNA) sequences, constitute a major human genomic component. SatDNA sequences can vary on a large number of features, including nucleotide composition, complexity, and abundance. Several satDNA families have been identified and characterized in the human genome through time, albeit at different speeds. Human satDNA families present a high degree of sub-variability, leading to the definition of various subfamilies with different organization and clustered localization. Evolution of satDNA analysis has enabled the progressive characterization of satDNA features. Despite recent advances in the sequencing of centromeric arrays, comprehensive genomic studies to assess their variability are still required to provide accurate and proportional representation of satDNA (peri)centromeric/acrocentric short arm sequences. Approaches combining multiple techniques have been successfully applied and seem to be the path to follow for generating integrated knowledge in the promising field of human satDNA biology. MDPI 2021-04-29 /pmc/articles/PMC8125562/ /pubmed/33946766 http://dx.doi.org/10.3390/ijms22094707 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Lopes, Mariana
Louzada, Sandra
Gama-Carvalho, Margarida
Chaves, Raquel
Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time
title Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time
title_full Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time
title_fullStr Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time
title_full_unstemmed Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time
title_short Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time
title_sort genomic tackling of human satellite dna: breaking barriers through time
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8125562/
https://www.ncbi.nlm.nih.gov/pubmed/33946766
http://dx.doi.org/10.3390/ijms22094707
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