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Structural Refolding and Thermal Stability of Myoglobin in the Presence of Mixture of Crowders: Importance of Various Interactions for Protein Stabilization in Crowded Conditions

The intracellular environment is overcrowded with a range of molecules (small and large), all of which influence protein conformation. As a result, understanding how proteins fold and stay functional in such crowded conditions is essential. Several in vitro experiments have looked into the effects o...

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Autores principales: Parray, Zahoor Ahmad, Ahmad, Faizan, Hassan, Md. Imtaiyaz, Ahmed, Anwar, Almajhdi, Fahad N., Malik, Ajamaluddin, Hussain, Tajamul, Islam, Asimul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8126177/
https://www.ncbi.nlm.nih.gov/pubmed/34068693
http://dx.doi.org/10.3390/molecules26092807
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author Parray, Zahoor Ahmad
Ahmad, Faizan
Hassan, Md. Imtaiyaz
Ahmed, Anwar
Almajhdi, Fahad N.
Malik, Ajamaluddin
Hussain, Tajamul
Islam, Asimul
author_facet Parray, Zahoor Ahmad
Ahmad, Faizan
Hassan, Md. Imtaiyaz
Ahmed, Anwar
Almajhdi, Fahad N.
Malik, Ajamaluddin
Hussain, Tajamul
Islam, Asimul
author_sort Parray, Zahoor Ahmad
collection PubMed
description The intracellular environment is overcrowded with a range of molecules (small and large), all of which influence protein conformation. As a result, understanding how proteins fold and stay functional in such crowded conditions is essential. Several in vitro experiments have looked into the effects of macromolecular crowding on different proteins. However, there are hardly any reports regarding small molecular crowders used alone and in mixtures to observe their effects on the structure and stability of the proteins, which mimics of the cellular conditions. Here we investigate the effect of different mixtures of crowders, ethylene glycol (EG) and its polymer polyethylene glycol (PEG 400 Da) on the structural and thermal stability of myoglobin (Mb). Our results show that monomer (EG) has no significant effect on the structure of Mb, while the polymer disrupts its structure and decreases its stability. Conversely, the additive effect of crowders showed structural refolding of the protein to some extent. Moreover, the calorimetric binding studies of the protein showed very weak interactions with the mixture of crowders. Usually, we can assume that soft interactions induce structural perturbations while exclusion volume effects stabilize the protein structure; therefore, we hypothesize that under in vivo crowded conditions, both phenomena occur and maintain the stability and function of proteins.
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spelling pubmed-81261772021-05-17 Structural Refolding and Thermal Stability of Myoglobin in the Presence of Mixture of Crowders: Importance of Various Interactions for Protein Stabilization in Crowded Conditions Parray, Zahoor Ahmad Ahmad, Faizan Hassan, Md. Imtaiyaz Ahmed, Anwar Almajhdi, Fahad N. Malik, Ajamaluddin Hussain, Tajamul Islam, Asimul Molecules Article The intracellular environment is overcrowded with a range of molecules (small and large), all of which influence protein conformation. As a result, understanding how proteins fold and stay functional in such crowded conditions is essential. Several in vitro experiments have looked into the effects of macromolecular crowding on different proteins. However, there are hardly any reports regarding small molecular crowders used alone and in mixtures to observe their effects on the structure and stability of the proteins, which mimics of the cellular conditions. Here we investigate the effect of different mixtures of crowders, ethylene glycol (EG) and its polymer polyethylene glycol (PEG 400 Da) on the structural and thermal stability of myoglobin (Mb). Our results show that monomer (EG) has no significant effect on the structure of Mb, while the polymer disrupts its structure and decreases its stability. Conversely, the additive effect of crowders showed structural refolding of the protein to some extent. Moreover, the calorimetric binding studies of the protein showed very weak interactions with the mixture of crowders. Usually, we can assume that soft interactions induce structural perturbations while exclusion volume effects stabilize the protein structure; therefore, we hypothesize that under in vivo crowded conditions, both phenomena occur and maintain the stability and function of proteins. MDPI 2021-05-10 /pmc/articles/PMC8126177/ /pubmed/34068693 http://dx.doi.org/10.3390/molecules26092807 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Parray, Zahoor Ahmad
Ahmad, Faizan
Hassan, Md. Imtaiyaz
Ahmed, Anwar
Almajhdi, Fahad N.
Malik, Ajamaluddin
Hussain, Tajamul
Islam, Asimul
Structural Refolding and Thermal Stability of Myoglobin in the Presence of Mixture of Crowders: Importance of Various Interactions for Protein Stabilization in Crowded Conditions
title Structural Refolding and Thermal Stability of Myoglobin in the Presence of Mixture of Crowders: Importance of Various Interactions for Protein Stabilization in Crowded Conditions
title_full Structural Refolding and Thermal Stability of Myoglobin in the Presence of Mixture of Crowders: Importance of Various Interactions for Protein Stabilization in Crowded Conditions
title_fullStr Structural Refolding and Thermal Stability of Myoglobin in the Presence of Mixture of Crowders: Importance of Various Interactions for Protein Stabilization in Crowded Conditions
title_full_unstemmed Structural Refolding and Thermal Stability of Myoglobin in the Presence of Mixture of Crowders: Importance of Various Interactions for Protein Stabilization in Crowded Conditions
title_short Structural Refolding and Thermal Stability of Myoglobin in the Presence of Mixture of Crowders: Importance of Various Interactions for Protein Stabilization in Crowded Conditions
title_sort structural refolding and thermal stability of myoglobin in the presence of mixture of crowders: importance of various interactions for protein stabilization in crowded conditions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8126177/
https://www.ncbi.nlm.nih.gov/pubmed/34068693
http://dx.doi.org/10.3390/molecules26092807
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