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Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs
A central question of evolutionary dynamics on graphs is whether or not a mutation introduced in a population of residents survives and eventually even spreads to the whole population, or becomes extinct. The outcome naturally depends on the fitness of the mutant and the rules by which mutants and r...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer Berlin Heidelberg
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8126557/ https://www.ncbi.nlm.nih.gov/pubmed/33993365 http://dx.doi.org/10.1007/s00285-021-01609-y |
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author | Richter, Hendrik |
author_facet | Richter, Hendrik |
author_sort | Richter, Hendrik |
collection | PubMed |
description | A central question of evolutionary dynamics on graphs is whether or not a mutation introduced in a population of residents survives and eventually even spreads to the whole population, or becomes extinct. The outcome naturally depends on the fitness of the mutant and the rules by which mutants and residents may propagate on the network, but arguably the most determining factor is the network structure. Some structured networks are transient amplifiers. They increase for a certain fitness range the fixation probability of beneficial mutations as compared to a well-mixed population. We study a perturbation method for identifying transient amplifiers for death–birth updating. The method involves calculating the coalescence times of random walks on graphs and finding the vertex with the largest remeeting time. If the graph is perturbed by removing an edge from this vertex, there is a certain likelihood that the resulting perturbed graph is a transient amplifier. We test all pairwise nonisomorphic regular graphs up to a certain order and thus cover the whole structural range expressible by these graphs. For cubic and quartic regular graphs we find a sufficiently large number of transient amplifiers. For these networks we carry out a spectral analysis and show that the graphs from which transient amplifiers can be constructed share certain structural properties. Identifying spectral and structural properties may promote finding and designing such networks. |
format | Online Article Text |
id | pubmed-8126557 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-81265572021-05-26 Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs Richter, Hendrik J Math Biol Article A central question of evolutionary dynamics on graphs is whether or not a mutation introduced in a population of residents survives and eventually even spreads to the whole population, or becomes extinct. The outcome naturally depends on the fitness of the mutant and the rules by which mutants and residents may propagate on the network, but arguably the most determining factor is the network structure. Some structured networks are transient amplifiers. They increase for a certain fitness range the fixation probability of beneficial mutations as compared to a well-mixed population. We study a perturbation method for identifying transient amplifiers for death–birth updating. The method involves calculating the coalescence times of random walks on graphs and finding the vertex with the largest remeeting time. If the graph is perturbed by removing an edge from this vertex, there is a certain likelihood that the resulting perturbed graph is a transient amplifier. We test all pairwise nonisomorphic regular graphs up to a certain order and thus cover the whole structural range expressible by these graphs. For cubic and quartic regular graphs we find a sufficiently large number of transient amplifiers. For these networks we carry out a spectral analysis and show that the graphs from which transient amplifiers can be constructed share certain structural properties. Identifying spectral and structural properties may promote finding and designing such networks. Springer Berlin Heidelberg 2021-05-16 2021 /pmc/articles/PMC8126557/ /pubmed/33993365 http://dx.doi.org/10.1007/s00285-021-01609-y Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Richter, Hendrik Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs |
title | Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs |
title_full | Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs |
title_fullStr | Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs |
title_full_unstemmed | Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs |
title_short | Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs |
title_sort | spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8126557/ https://www.ncbi.nlm.nih.gov/pubmed/33993365 http://dx.doi.org/10.1007/s00285-021-01609-y |
work_keys_str_mv | AT richterhendrik spectralanalysisoftransientamplifiersfordeathbirthupdatingconstructedfromregulargraphs |