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Anomalous SAXS at P12 beamline EMBL Hamburg: instrumentation and applications

Small-angle X-ray scattering (SAXS) is an established method for studying nanostructured systems and in particular biological macromolecules in solution. To obtain element-specific information about the sample, anomalous SAXS (ASAXS) exploits changes of the scattering properties of selected atoms wh...

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Autores principales: Gruzinov, Andrey Yu., Schroer, Martin A., Manalastas-Cantos, Karen, Kikhney, Alexey G., Hajizadeh, Nelly R., Schulz, Florian, Franke, Daniel, Svergun, Dmitri I., Blanchet, Clement E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8127372/
https://www.ncbi.nlm.nih.gov/pubmed/33949989
http://dx.doi.org/10.1107/S1600577521003404
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author Gruzinov, Andrey Yu.
Schroer, Martin A.
Manalastas-Cantos, Karen
Kikhney, Alexey G.
Hajizadeh, Nelly R.
Schulz, Florian
Franke, Daniel
Svergun, Dmitri I.
Blanchet, Clement E.
author_facet Gruzinov, Andrey Yu.
Schroer, Martin A.
Manalastas-Cantos, Karen
Kikhney, Alexey G.
Hajizadeh, Nelly R.
Schulz, Florian
Franke, Daniel
Svergun, Dmitri I.
Blanchet, Clement E.
author_sort Gruzinov, Andrey Yu.
collection PubMed
description Small-angle X-ray scattering (SAXS) is an established method for studying nanostructured systems and in particular biological macromolecules in solution. To obtain element-specific information about the sample, anomalous SAXS (ASAXS) exploits changes of the scattering properties of selected atoms when the energy of the incident X-rays is close to the binding energy of their electrons. While ASAXS is widely applied to condensed matter and inorganic systems, its use for biological macromolecules is challenging because of the weak anomalous effect. Biological objects are often only available in small quantities and are prone to radiation damage, which makes biological ASAXS measurements very challenging. The BioSAXS beamline P12 operated by the European Molecular Biology Laboratory (EMBL) at the PETRA III storage ring (DESY, Hamburg) is dedicated to studies of weakly scattering objects. Here, recent developments at P12 allowing for ASAXS measurements are presented. The beamline control, data acquisition and data reduction pipeline of the beamline were adapted to conduct ASAXS experiments. Modelling tools were developed to compute ASAXS patterns from atomic models, which can be used to analyze the data and to help designing appropriate data collection strategies. These developments are illustrated with ASAXS experiments on different model systems performed at the P12 beamline.
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spelling pubmed-81273722021-06-14 Anomalous SAXS at P12 beamline EMBL Hamburg: instrumentation and applications Gruzinov, Andrey Yu. Schroer, Martin A. Manalastas-Cantos, Karen Kikhney, Alexey G. Hajizadeh, Nelly R. Schulz, Florian Franke, Daniel Svergun, Dmitri I. Blanchet, Clement E. J Synchrotron Radiat Research Papers Small-angle X-ray scattering (SAXS) is an established method for studying nanostructured systems and in particular biological macromolecules in solution. To obtain element-specific information about the sample, anomalous SAXS (ASAXS) exploits changes of the scattering properties of selected atoms when the energy of the incident X-rays is close to the binding energy of their electrons. While ASAXS is widely applied to condensed matter and inorganic systems, its use for biological macromolecules is challenging because of the weak anomalous effect. Biological objects are often only available in small quantities and are prone to radiation damage, which makes biological ASAXS measurements very challenging. The BioSAXS beamline P12 operated by the European Molecular Biology Laboratory (EMBL) at the PETRA III storage ring (DESY, Hamburg) is dedicated to studies of weakly scattering objects. Here, recent developments at P12 allowing for ASAXS measurements are presented. The beamline control, data acquisition and data reduction pipeline of the beamline were adapted to conduct ASAXS experiments. Modelling tools were developed to compute ASAXS patterns from atomic models, which can be used to analyze the data and to help designing appropriate data collection strategies. These developments are illustrated with ASAXS experiments on different model systems performed at the P12 beamline. International Union of Crystallography 2021-04-14 /pmc/articles/PMC8127372/ /pubmed/33949989 http://dx.doi.org/10.1107/S1600577521003404 Text en © Andrey Yu. Gruzinov et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Gruzinov, Andrey Yu.
Schroer, Martin A.
Manalastas-Cantos, Karen
Kikhney, Alexey G.
Hajizadeh, Nelly R.
Schulz, Florian
Franke, Daniel
Svergun, Dmitri I.
Blanchet, Clement E.
Anomalous SAXS at P12 beamline EMBL Hamburg: instrumentation and applications
title Anomalous SAXS at P12 beamline EMBL Hamburg: instrumentation and applications
title_full Anomalous SAXS at P12 beamline EMBL Hamburg: instrumentation and applications
title_fullStr Anomalous SAXS at P12 beamline EMBL Hamburg: instrumentation and applications
title_full_unstemmed Anomalous SAXS at P12 beamline EMBL Hamburg: instrumentation and applications
title_short Anomalous SAXS at P12 beamline EMBL Hamburg: instrumentation and applications
title_sort anomalous saxs at p12 beamline embl hamburg: instrumentation and applications
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8127372/
https://www.ncbi.nlm.nih.gov/pubmed/33949989
http://dx.doi.org/10.1107/S1600577521003404
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