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Evaluation of a novel deep learning–based classifier for perifissural nodules

OBJECTIVES: To evaluate the performance of a novel convolutional neural network (CNN) for the classification of typical perifissural nodules (PFN). METHODS: Chest CT data from two centers in the UK and The Netherlands (1668 unique nodules, 1260 individuals) were collected. Pulmonary nodules were cla...

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Autores principales: Han, Daiwei, Heuvelmans, Marjolein, Rook, Mieneke, Dorrius, Monique, van Houten, Luutsen, Price, Noah Waterfield, Pickup, Lyndsey C., Novotny, Petr, Oudkerk, Matthijs, Declerck, Jerome, Gleeson, Fergus, van Ooijen, Peter, Vliegenthart, Rozemarijn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8128854/
https://www.ncbi.nlm.nih.gov/pubmed/33269413
http://dx.doi.org/10.1007/s00330-020-07509-x
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author Han, Daiwei
Heuvelmans, Marjolein
Rook, Mieneke
Dorrius, Monique
van Houten, Luutsen
Price, Noah Waterfield
Pickup, Lyndsey C.
Novotny, Petr
Oudkerk, Matthijs
Declerck, Jerome
Gleeson, Fergus
van Ooijen, Peter
Vliegenthart, Rozemarijn
author_facet Han, Daiwei
Heuvelmans, Marjolein
Rook, Mieneke
Dorrius, Monique
van Houten, Luutsen
Price, Noah Waterfield
Pickup, Lyndsey C.
Novotny, Petr
Oudkerk, Matthijs
Declerck, Jerome
Gleeson, Fergus
van Ooijen, Peter
Vliegenthart, Rozemarijn
author_sort Han, Daiwei
collection PubMed
description OBJECTIVES: To evaluate the performance of a novel convolutional neural network (CNN) for the classification of typical perifissural nodules (PFN). METHODS: Chest CT data from two centers in the UK and The Netherlands (1668 unique nodules, 1260 individuals) were collected. Pulmonary nodules were classified into subtypes, including “typical PFNs” on-site, and were reviewed by a central clinician. The dataset was divided into a training/cross-validation set of 1557 nodules (1103 individuals) and a test set of 196 nodules (158 individuals). For the test set, three radiologically trained readers classified the nodules into three nodule categories: typical PFN, atypical PFN, and non-PFN. The consensus of the three readers was used as reference to evaluate the performance of the PFN-CNN. Typical PFNs were considered as positive results, and atypical PFNs and non-PFNs were grouped as negative results. PFN-CNN performance was evaluated using the ROC curve, confusion matrix, and Cohen’s kappa. RESULTS: Internal validation yielded a mean AUC of 91.9% (95% CI 90.6–92.9) with 78.7% sensitivity and 90.4% specificity. For the test set, the reader consensus rated 45/196 (23%) of nodules as typical PFN. The classifier-reader agreement (k = 0.62–0.75) was similar to the inter-reader agreement (k = 0.64–0.79). Area under the ROC curve was 95.8% (95% CI 93.3–98.4), with a sensitivity of 95.6% (95% CI 84.9–99.5), and specificity of 88.1% (95% CI 81.8–92.8). CONCLUSION: The PFN-CNN showed excellent performance in classifying typical PFNs. Its agreement with radiologically trained readers is within the range of inter-reader agreement. Thus, the CNN-based system has potential in clinical and screening settings to rule out perifissural nodules and increase reader efficiency. KEY POINTS: • Agreement between the PFN-CNN and radiologically trained readers is within the range of inter-reader agreement. • The CNN model for the classification of typical PFNs achieved an AUC of 95.8% (95% CI 93.3–98.4) with 95.6% (95% CI 84.9–99.5) sensitivity and 88.1% (95% CI 81.8–92.8) specificity compared to the consensus of three readers. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00330-020-07509-x.
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spelling pubmed-81288542021-05-24 Evaluation of a novel deep learning–based classifier for perifissural nodules Han, Daiwei Heuvelmans, Marjolein Rook, Mieneke Dorrius, Monique van Houten, Luutsen Price, Noah Waterfield Pickup, Lyndsey C. Novotny, Petr Oudkerk, Matthijs Declerck, Jerome Gleeson, Fergus van Ooijen, Peter Vliegenthart, Rozemarijn Eur Radiol Chest OBJECTIVES: To evaluate the performance of a novel convolutional neural network (CNN) for the classification of typical perifissural nodules (PFN). METHODS: Chest CT data from two centers in the UK and The Netherlands (1668 unique nodules, 1260 individuals) were collected. Pulmonary nodules were classified into subtypes, including “typical PFNs” on-site, and were reviewed by a central clinician. The dataset was divided into a training/cross-validation set of 1557 nodules (1103 individuals) and a test set of 196 nodules (158 individuals). For the test set, three radiologically trained readers classified the nodules into three nodule categories: typical PFN, atypical PFN, and non-PFN. The consensus of the three readers was used as reference to evaluate the performance of the PFN-CNN. Typical PFNs were considered as positive results, and atypical PFNs and non-PFNs were grouped as negative results. PFN-CNN performance was evaluated using the ROC curve, confusion matrix, and Cohen’s kappa. RESULTS: Internal validation yielded a mean AUC of 91.9% (95% CI 90.6–92.9) with 78.7% sensitivity and 90.4% specificity. For the test set, the reader consensus rated 45/196 (23%) of nodules as typical PFN. The classifier-reader agreement (k = 0.62–0.75) was similar to the inter-reader agreement (k = 0.64–0.79). Area under the ROC curve was 95.8% (95% CI 93.3–98.4), with a sensitivity of 95.6% (95% CI 84.9–99.5), and specificity of 88.1% (95% CI 81.8–92.8). CONCLUSION: The PFN-CNN showed excellent performance in classifying typical PFNs. Its agreement with radiologically trained readers is within the range of inter-reader agreement. Thus, the CNN-based system has potential in clinical and screening settings to rule out perifissural nodules and increase reader efficiency. KEY POINTS: • Agreement between the PFN-CNN and radiologically trained readers is within the range of inter-reader agreement. • The CNN model for the classification of typical PFNs achieved an AUC of 95.8% (95% CI 93.3–98.4) with 95.6% (95% CI 84.9–99.5) sensitivity and 88.1% (95% CI 81.8–92.8) specificity compared to the consensus of three readers. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00330-020-07509-x. Springer Berlin Heidelberg 2020-12-02 2021 /pmc/articles/PMC8128854/ /pubmed/33269413 http://dx.doi.org/10.1007/s00330-020-07509-x Text en © The Author(s) 2020 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Chest
Han, Daiwei
Heuvelmans, Marjolein
Rook, Mieneke
Dorrius, Monique
van Houten, Luutsen
Price, Noah Waterfield
Pickup, Lyndsey C.
Novotny, Petr
Oudkerk, Matthijs
Declerck, Jerome
Gleeson, Fergus
van Ooijen, Peter
Vliegenthart, Rozemarijn
Evaluation of a novel deep learning–based classifier for perifissural nodules
title Evaluation of a novel deep learning–based classifier for perifissural nodules
title_full Evaluation of a novel deep learning–based classifier for perifissural nodules
title_fullStr Evaluation of a novel deep learning–based classifier for perifissural nodules
title_full_unstemmed Evaluation of a novel deep learning–based classifier for perifissural nodules
title_short Evaluation of a novel deep learning–based classifier for perifissural nodules
title_sort evaluation of a novel deep learning–based classifier for perifissural nodules
topic Chest
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8128854/
https://www.ncbi.nlm.nih.gov/pubmed/33269413
http://dx.doi.org/10.1007/s00330-020-07509-x
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