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Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomics
Few studies have addressed radiomics based differentiation of Glioblastoma (GBM) and intracranial metastatic disease (IMD). However, the effect of different tumor masks, comparison of single versus multiparametric MRI (mp-MRI) or select combination of sequences remains undefined. We cross-compared m...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8131619/ https://www.ncbi.nlm.nih.gov/pubmed/34006893 http://dx.doi.org/10.1038/s41598-021-90032-w |
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author | Priya, Sarv Liu, Yanan Ward, Caitlin Le, Nam H. Soni, Neetu Pillenahalli Maheshwarappa , Ravishankar Monga, Varun Zhang, Honghai Sonka, Milan Bathla, Girish |
author_facet | Priya, Sarv Liu, Yanan Ward, Caitlin Le, Nam H. Soni, Neetu Pillenahalli Maheshwarappa , Ravishankar Monga, Varun Zhang, Honghai Sonka, Milan Bathla, Girish |
author_sort | Priya, Sarv |
collection | PubMed |
description | Few studies have addressed radiomics based differentiation of Glioblastoma (GBM) and intracranial metastatic disease (IMD). However, the effect of different tumor masks, comparison of single versus multiparametric MRI (mp-MRI) or select combination of sequences remains undefined. We cross-compared multiple radiomics based machine learning (ML) models using mp-MRI to determine optimized configurations. Our retrospective study included 60 GBM and 60 IMD patients. Forty-five combinations of ML models and feature reduction strategies were assessed for features extracted from whole tumor and edema masks using mp-MRI [T1W, T2W, T1-contrast enhanced (T1-CE), ADC, FLAIR], individual MRI sequences and combined T1-CE and FLAIR sequences. Model performance was assessed using receiver operating characteristic curve. For mp-MRI, the best model was LASSO model fit using full feature set (AUC 0.953). FLAIR was the best individual sequence (LASSO-full feature set, AUC 0.951). For combined T1-CE/FLAIR sequence, adaBoost-full feature set was the best performer (AUC 0.951). No significant difference was seen between top models across all scenarios, including models using FLAIR only, mp-MRI and combined T1-CE/FLAIR sequence. Top features were extracted from both the whole tumor and edema masks. Shape sphericity is an important discriminating feature. |
format | Online Article Text |
id | pubmed-8131619 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-81316192021-05-25 Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomics Priya, Sarv Liu, Yanan Ward, Caitlin Le, Nam H. Soni, Neetu Pillenahalli Maheshwarappa , Ravishankar Monga, Varun Zhang, Honghai Sonka, Milan Bathla, Girish Sci Rep Article Few studies have addressed radiomics based differentiation of Glioblastoma (GBM) and intracranial metastatic disease (IMD). However, the effect of different tumor masks, comparison of single versus multiparametric MRI (mp-MRI) or select combination of sequences remains undefined. We cross-compared multiple radiomics based machine learning (ML) models using mp-MRI to determine optimized configurations. Our retrospective study included 60 GBM and 60 IMD patients. Forty-five combinations of ML models and feature reduction strategies were assessed for features extracted from whole tumor and edema masks using mp-MRI [T1W, T2W, T1-contrast enhanced (T1-CE), ADC, FLAIR], individual MRI sequences and combined T1-CE and FLAIR sequences. Model performance was assessed using receiver operating characteristic curve. For mp-MRI, the best model was LASSO model fit using full feature set (AUC 0.953). FLAIR was the best individual sequence (LASSO-full feature set, AUC 0.951). For combined T1-CE/FLAIR sequence, adaBoost-full feature set was the best performer (AUC 0.951). No significant difference was seen between top models across all scenarios, including models using FLAIR only, mp-MRI and combined T1-CE/FLAIR sequence. Top features were extracted from both the whole tumor and edema masks. Shape sphericity is an important discriminating feature. Nature Publishing Group UK 2021-05-18 /pmc/articles/PMC8131619/ /pubmed/34006893 http://dx.doi.org/10.1038/s41598-021-90032-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Priya, Sarv Liu, Yanan Ward, Caitlin Le, Nam H. Soni, Neetu Pillenahalli Maheshwarappa , Ravishankar Monga, Varun Zhang, Honghai Sonka, Milan Bathla, Girish Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomics |
title | Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomics |
title_full | Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomics |
title_fullStr | Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomics |
title_full_unstemmed | Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomics |
title_short | Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomics |
title_sort | machine learning based differentiation of glioblastoma from brain metastasis using mri derived radiomics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8131619/ https://www.ncbi.nlm.nih.gov/pubmed/34006893 http://dx.doi.org/10.1038/s41598-021-90032-w |
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