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Spatial multi-omics sequencing for fixed tissue via DBiT-seq

This protocol describes the use of the deterministic barcoding in tissue for spatial omics sequencing platform to construct a multi-omics atlas on fixed frozen tissue samples. This approach uses a microfluidic-based method to introduce combinatorial DNA oligo barcodes directly to the cells in a tiss...

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Detalles Bibliográficos
Autores principales: Su, Graham, Qin, Xiaoyu, Enninful, Archibald, Bai, Zhiliang, Deng, Yanxiang, Liu, Yang, Fan, Rong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8132129/
https://www.ncbi.nlm.nih.gov/pubmed/34027489
http://dx.doi.org/10.1016/j.xpro.2021.100532
Descripción
Sumario:This protocol describes the use of the deterministic barcoding in tissue for spatial omics sequencing platform to construct a multi-omics atlas on fixed frozen tissue samples. This approach uses a microfluidic-based method to introduce combinatorial DNA oligo barcodes directly to the cells in a tissue section fixed on a glass slide. This technique does not directly resolve single cells but can achieve a near-single-cell resolution for spatial transcriptomics and spatial analysis of a targeted panel of proteins. For complete details on the use and execution of this protocol, please refer to Liu et al. (2020).