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Spatial multi-omics sequencing for fixed tissue via DBiT-seq

This protocol describes the use of the deterministic barcoding in tissue for spatial omics sequencing platform to construct a multi-omics atlas on fixed frozen tissue samples. This approach uses a microfluidic-based method to introduce combinatorial DNA oligo barcodes directly to the cells in a tiss...

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Detalles Bibliográficos
Autores principales: Su, Graham, Qin, Xiaoyu, Enninful, Archibald, Bai, Zhiliang, Deng, Yanxiang, Liu, Yang, Fan, Rong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8132129/
https://www.ncbi.nlm.nih.gov/pubmed/34027489
http://dx.doi.org/10.1016/j.xpro.2021.100532
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author Su, Graham
Qin, Xiaoyu
Enninful, Archibald
Bai, Zhiliang
Deng, Yanxiang
Liu, Yang
Fan, Rong
author_facet Su, Graham
Qin, Xiaoyu
Enninful, Archibald
Bai, Zhiliang
Deng, Yanxiang
Liu, Yang
Fan, Rong
author_sort Su, Graham
collection PubMed
description This protocol describes the use of the deterministic barcoding in tissue for spatial omics sequencing platform to construct a multi-omics atlas on fixed frozen tissue samples. This approach uses a microfluidic-based method to introduce combinatorial DNA oligo barcodes directly to the cells in a tissue section fixed on a glass slide. This technique does not directly resolve single cells but can achieve a near-single-cell resolution for spatial transcriptomics and spatial analysis of a targeted panel of proteins. For complete details on the use and execution of this protocol, please refer to Liu et al. (2020).
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spelling pubmed-81321292021-05-21 Spatial multi-omics sequencing for fixed tissue via DBiT-seq Su, Graham Qin, Xiaoyu Enninful, Archibald Bai, Zhiliang Deng, Yanxiang Liu, Yang Fan, Rong STAR Protoc Protocol This protocol describes the use of the deterministic barcoding in tissue for spatial omics sequencing platform to construct a multi-omics atlas on fixed frozen tissue samples. This approach uses a microfluidic-based method to introduce combinatorial DNA oligo barcodes directly to the cells in a tissue section fixed on a glass slide. This technique does not directly resolve single cells but can achieve a near-single-cell resolution for spatial transcriptomics and spatial analysis of a targeted panel of proteins. For complete details on the use and execution of this protocol, please refer to Liu et al. (2020). Elsevier 2021-05-11 /pmc/articles/PMC8132129/ /pubmed/34027489 http://dx.doi.org/10.1016/j.xpro.2021.100532 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Protocol
Su, Graham
Qin, Xiaoyu
Enninful, Archibald
Bai, Zhiliang
Deng, Yanxiang
Liu, Yang
Fan, Rong
Spatial multi-omics sequencing for fixed tissue via DBiT-seq
title Spatial multi-omics sequencing for fixed tissue via DBiT-seq
title_full Spatial multi-omics sequencing for fixed tissue via DBiT-seq
title_fullStr Spatial multi-omics sequencing for fixed tissue via DBiT-seq
title_full_unstemmed Spatial multi-omics sequencing for fixed tissue via DBiT-seq
title_short Spatial multi-omics sequencing for fixed tissue via DBiT-seq
title_sort spatial multi-omics sequencing for fixed tissue via dbit-seq
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8132129/
https://www.ncbi.nlm.nih.gov/pubmed/34027489
http://dx.doi.org/10.1016/j.xpro.2021.100532
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