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Spatial multi-omics sequencing for fixed tissue via DBiT-seq
This protocol describes the use of the deterministic barcoding in tissue for spatial omics sequencing platform to construct a multi-omics atlas on fixed frozen tissue samples. This approach uses a microfluidic-based method to introduce combinatorial DNA oligo barcodes directly to the cells in a tiss...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8132129/ https://www.ncbi.nlm.nih.gov/pubmed/34027489 http://dx.doi.org/10.1016/j.xpro.2021.100532 |
_version_ | 1783694857380823040 |
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author | Su, Graham Qin, Xiaoyu Enninful, Archibald Bai, Zhiliang Deng, Yanxiang Liu, Yang Fan, Rong |
author_facet | Su, Graham Qin, Xiaoyu Enninful, Archibald Bai, Zhiliang Deng, Yanxiang Liu, Yang Fan, Rong |
author_sort | Su, Graham |
collection | PubMed |
description | This protocol describes the use of the deterministic barcoding in tissue for spatial omics sequencing platform to construct a multi-omics atlas on fixed frozen tissue samples. This approach uses a microfluidic-based method to introduce combinatorial DNA oligo barcodes directly to the cells in a tissue section fixed on a glass slide. This technique does not directly resolve single cells but can achieve a near-single-cell resolution for spatial transcriptomics and spatial analysis of a targeted panel of proteins. For complete details on the use and execution of this protocol, please refer to Liu et al. (2020). |
format | Online Article Text |
id | pubmed-8132129 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-81321292021-05-21 Spatial multi-omics sequencing for fixed tissue via DBiT-seq Su, Graham Qin, Xiaoyu Enninful, Archibald Bai, Zhiliang Deng, Yanxiang Liu, Yang Fan, Rong STAR Protoc Protocol This protocol describes the use of the deterministic barcoding in tissue for spatial omics sequencing platform to construct a multi-omics atlas on fixed frozen tissue samples. This approach uses a microfluidic-based method to introduce combinatorial DNA oligo barcodes directly to the cells in a tissue section fixed on a glass slide. This technique does not directly resolve single cells but can achieve a near-single-cell resolution for spatial transcriptomics and spatial analysis of a targeted panel of proteins. For complete details on the use and execution of this protocol, please refer to Liu et al. (2020). Elsevier 2021-05-11 /pmc/articles/PMC8132129/ /pubmed/34027489 http://dx.doi.org/10.1016/j.xpro.2021.100532 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Protocol Su, Graham Qin, Xiaoyu Enninful, Archibald Bai, Zhiliang Deng, Yanxiang Liu, Yang Fan, Rong Spatial multi-omics sequencing for fixed tissue via DBiT-seq |
title | Spatial multi-omics sequencing for fixed tissue via DBiT-seq |
title_full | Spatial multi-omics sequencing for fixed tissue via DBiT-seq |
title_fullStr | Spatial multi-omics sequencing for fixed tissue via DBiT-seq |
title_full_unstemmed | Spatial multi-omics sequencing for fixed tissue via DBiT-seq |
title_short | Spatial multi-omics sequencing for fixed tissue via DBiT-seq |
title_sort | spatial multi-omics sequencing for fixed tissue via dbit-seq |
topic | Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8132129/ https://www.ncbi.nlm.nih.gov/pubmed/34027489 http://dx.doi.org/10.1016/j.xpro.2021.100532 |
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