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Fast Whole-Genome Phylogeny of the COVID-19 Virus SARS-CoV-2 by Compression

We analyze the whole genome phylogeny and taxonomy of the SARS-CoV-2 virus using compression. This is a new fast alignment-free method called the “normalized compression distance” (NCD) method. It discovers all effective similarities based on Kolmogorov complexity. The latter being incomputable we a...

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Detalles Bibliográficos
Autores principales:	Cilibrasi, Rudi L., Vitányi, Paul M.B.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8132223/ https://www.ncbi.nlm.nih.gov/pubmed/34013267 http://dx.doi.org/10.1101/2020.07.22.216242

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