Cargando…
Ecological and biogeographic drivers of biodiversity cannot be resolved using clade age-richness data
Estimates of evolutionary diversification rates – speciation and extinction – have been used extensively to explain global biodiversity patterns. Many studies have analyzed diversification rates derived from just two pieces of information: a clade’s age and its extant species richness. This “age-ric...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8134473/ https://www.ncbi.nlm.nih.gov/pubmed/34011982 http://dx.doi.org/10.1038/s41467-021-23307-5 |
_version_ | 1783695183490056192 |
---|---|
author | Rabosky, Daniel L. Benson, Roger B. J. |
author_facet | Rabosky, Daniel L. Benson, Roger B. J. |
author_sort | Rabosky, Daniel L. |
collection | PubMed |
description | Estimates of evolutionary diversification rates – speciation and extinction – have been used extensively to explain global biodiversity patterns. Many studies have analyzed diversification rates derived from just two pieces of information: a clade’s age and its extant species richness. This “age-richness rate” (ARR) estimator provides a convenient shortcut for comparative studies, but makes strong assumptions about the dynamics of species richness through time. Here we demonstrate that use of the ARR estimator in comparative studies is problematic on both theoretical and empirical grounds. We prove mathematically that ARR estimates are non-identifiable: there is no information in the data for a single clade that can distinguish a process with positive net diversification from one where net diversification is zero. Using paleontological time series, we demonstrate that the ARR estimator has no predictive ability for real datasets. These pathologies arise because the ARR inference procedure yields “point estimates” that have been computed under a saturated statistical model with zero degrees of freedom. Although ARR estimates remain useful in some contexts, they should be avoided for comparative studies of diversification and species richness. |
format | Online Article Text |
id | pubmed-8134473 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-81344732021-05-24 Ecological and biogeographic drivers of biodiversity cannot be resolved using clade age-richness data Rabosky, Daniel L. Benson, Roger B. J. Nat Commun Article Estimates of evolutionary diversification rates – speciation and extinction – have been used extensively to explain global biodiversity patterns. Many studies have analyzed diversification rates derived from just two pieces of information: a clade’s age and its extant species richness. This “age-richness rate” (ARR) estimator provides a convenient shortcut for comparative studies, but makes strong assumptions about the dynamics of species richness through time. Here we demonstrate that use of the ARR estimator in comparative studies is problematic on both theoretical and empirical grounds. We prove mathematically that ARR estimates are non-identifiable: there is no information in the data for a single clade that can distinguish a process with positive net diversification from one where net diversification is zero. Using paleontological time series, we demonstrate that the ARR estimator has no predictive ability for real datasets. These pathologies arise because the ARR inference procedure yields “point estimates” that have been computed under a saturated statistical model with zero degrees of freedom. Although ARR estimates remain useful in some contexts, they should be avoided for comparative studies of diversification and species richness. Nature Publishing Group UK 2021-05-19 /pmc/articles/PMC8134473/ /pubmed/34011982 http://dx.doi.org/10.1038/s41467-021-23307-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Rabosky, Daniel L. Benson, Roger B. J. Ecological and biogeographic drivers of biodiversity cannot be resolved using clade age-richness data |
title | Ecological and biogeographic drivers of biodiversity cannot be resolved using clade age-richness data |
title_full | Ecological and biogeographic drivers of biodiversity cannot be resolved using clade age-richness data |
title_fullStr | Ecological and biogeographic drivers of biodiversity cannot be resolved using clade age-richness data |
title_full_unstemmed | Ecological and biogeographic drivers of biodiversity cannot be resolved using clade age-richness data |
title_short | Ecological and biogeographic drivers of biodiversity cannot be resolved using clade age-richness data |
title_sort | ecological and biogeographic drivers of biodiversity cannot be resolved using clade age-richness data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8134473/ https://www.ncbi.nlm.nih.gov/pubmed/34011982 http://dx.doi.org/10.1038/s41467-021-23307-5 |
work_keys_str_mv | AT raboskydaniell ecologicalandbiogeographicdriversofbiodiversitycannotberesolvedusingcladeagerichnessdata AT bensonrogerbj ecologicalandbiogeographicdriversofbiodiversitycannotberesolvedusingcladeagerichnessdata |