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Automatic semantic segmentation of breast tumors in ultrasound images based on combining fuzzy logic and deep learning—A feasibility study

Computer aided diagnosis (CAD) of biomedical images assists physicians for a fast facilitated tissue characterization. A scheme based on combining fuzzy logic (FL) and deep learning (DL) for automatic semantic segmentation (SS) of tumors in breast ultrasound (BUS) images is proposed. The proposed sc...

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Autores principales: Badawy, Samir M., Mohamed, Abd El-Naser A., Hefnawy, Alaa A., Zidan, Hassan E., GadAllah, Mohammed T., El-Banby, Ghada M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8136850/
https://www.ncbi.nlm.nih.gov/pubmed/34014987
http://dx.doi.org/10.1371/journal.pone.0251899
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author Badawy, Samir M.
Mohamed, Abd El-Naser A.
Hefnawy, Alaa A.
Zidan, Hassan E.
GadAllah, Mohammed T.
El-Banby, Ghada M.
author_facet Badawy, Samir M.
Mohamed, Abd El-Naser A.
Hefnawy, Alaa A.
Zidan, Hassan E.
GadAllah, Mohammed T.
El-Banby, Ghada M.
author_sort Badawy, Samir M.
collection PubMed
description Computer aided diagnosis (CAD) of biomedical images assists physicians for a fast facilitated tissue characterization. A scheme based on combining fuzzy logic (FL) and deep learning (DL) for automatic semantic segmentation (SS) of tumors in breast ultrasound (BUS) images is proposed. The proposed scheme consists of two steps: the first is a FL based preprocessing, and the second is a Convolutional neural network (CNN) based SS. Eight well-known CNN based SS models have been utilized in the study. Studying the scheme was by a dataset of 400 cancerous BUS images and their corresponding 400 ground truth images. SS process has been applied in two modes: batch and one by one image processing. Three quantitative performance evaluation metrics have been utilized: global accuracy (GA), mean Jaccard Index (mean intersection over union (IoU)), and mean BF (Boundary F1) Score. In the batch processing mode: quantitative metrics’ average results over the eight utilized CNNs based SS models over the 400 cancerous BUS images were: 95.45% GA instead of 86.08% without applying fuzzy preprocessing step, 78.70% mean IoU instead of 49.61%, and 68.08% mean BF score instead of 42.63%. Moreover, the resulted segmented images could show tumors’ regions more accurate than with only CNN based SS. While, in one by one image processing mode: there has been no enhancement neither qualitatively nor quantitatively. So, only when a batch processing is needed, utilizing the proposed scheme may be helpful in enhancing automatic ss of tumors in BUS images. Otherwise applying the proposed approach on a one-by-one image mode will disrupt segmentation’s efficiency. The proposed batch processing scheme may be generalized for an enhanced CNN based SS of a targeted region of interest (ROI) in any batch of digital images. A modified small dataset is available: https://www.kaggle.com/mohammedtgadallah/mt-small-dataset (S1 Data).
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spelling pubmed-81368502021-06-02 Automatic semantic segmentation of breast tumors in ultrasound images based on combining fuzzy logic and deep learning—A feasibility study Badawy, Samir M. Mohamed, Abd El-Naser A. Hefnawy, Alaa A. Zidan, Hassan E. GadAllah, Mohammed T. El-Banby, Ghada M. PLoS One Research Article Computer aided diagnosis (CAD) of biomedical images assists physicians for a fast facilitated tissue characterization. A scheme based on combining fuzzy logic (FL) and deep learning (DL) for automatic semantic segmentation (SS) of tumors in breast ultrasound (BUS) images is proposed. The proposed scheme consists of two steps: the first is a FL based preprocessing, and the second is a Convolutional neural network (CNN) based SS. Eight well-known CNN based SS models have been utilized in the study. Studying the scheme was by a dataset of 400 cancerous BUS images and their corresponding 400 ground truth images. SS process has been applied in two modes: batch and one by one image processing. Three quantitative performance evaluation metrics have been utilized: global accuracy (GA), mean Jaccard Index (mean intersection over union (IoU)), and mean BF (Boundary F1) Score. In the batch processing mode: quantitative metrics’ average results over the eight utilized CNNs based SS models over the 400 cancerous BUS images were: 95.45% GA instead of 86.08% without applying fuzzy preprocessing step, 78.70% mean IoU instead of 49.61%, and 68.08% mean BF score instead of 42.63%. Moreover, the resulted segmented images could show tumors’ regions more accurate than with only CNN based SS. While, in one by one image processing mode: there has been no enhancement neither qualitatively nor quantitatively. So, only when a batch processing is needed, utilizing the proposed scheme may be helpful in enhancing automatic ss of tumors in BUS images. Otherwise applying the proposed approach on a one-by-one image mode will disrupt segmentation’s efficiency. The proposed batch processing scheme may be generalized for an enhanced CNN based SS of a targeted region of interest (ROI) in any batch of digital images. A modified small dataset is available: https://www.kaggle.com/mohammedtgadallah/mt-small-dataset (S1 Data). Public Library of Science 2021-05-20 /pmc/articles/PMC8136850/ /pubmed/34014987 http://dx.doi.org/10.1371/journal.pone.0251899 Text en © 2021 Badawy et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Badawy, Samir M.
Mohamed, Abd El-Naser A.
Hefnawy, Alaa A.
Zidan, Hassan E.
GadAllah, Mohammed T.
El-Banby, Ghada M.
Automatic semantic segmentation of breast tumors in ultrasound images based on combining fuzzy logic and deep learning—A feasibility study
title Automatic semantic segmentation of breast tumors in ultrasound images based on combining fuzzy logic and deep learning—A feasibility study
title_full Automatic semantic segmentation of breast tumors in ultrasound images based on combining fuzzy logic and deep learning—A feasibility study
title_fullStr Automatic semantic segmentation of breast tumors in ultrasound images based on combining fuzzy logic and deep learning—A feasibility study
title_full_unstemmed Automatic semantic segmentation of breast tumors in ultrasound images based on combining fuzzy logic and deep learning—A feasibility study
title_short Automatic semantic segmentation of breast tumors in ultrasound images based on combining fuzzy logic and deep learning—A feasibility study
title_sort automatic semantic segmentation of breast tumors in ultrasound images based on combining fuzzy logic and deep learning—a feasibility study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8136850/
https://www.ncbi.nlm.nih.gov/pubmed/34014987
http://dx.doi.org/10.1371/journal.pone.0251899
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