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Checklist for responsible deep learning modeling of medical images based on COVID-19 detection studies

The sudden outbreak and uncontrolled spread of COVID-19 disease is one of the most important global problems today. In a short period of time, it has led to the development of many deep neural network models for COVID-19 detection with modules for explainability. In this work, we carry out a systema...

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Autores principales: Hryniewska, Weronika, Bombiński, Przemysław, Szatkowski, Patryk, Tomaszewska, Paulina, Przelaskowski, Artur, Biecek, Przemysław
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Author(s). Published by Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8139442/
https://www.ncbi.nlm.nih.gov/pubmed/34054148
http://dx.doi.org/10.1016/j.patcog.2021.108035
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author Hryniewska, Weronika
Bombiński, Przemysław
Szatkowski, Patryk
Tomaszewska, Paulina
Przelaskowski, Artur
Biecek, Przemysław
author_facet Hryniewska, Weronika
Bombiński, Przemysław
Szatkowski, Patryk
Tomaszewska, Paulina
Przelaskowski, Artur
Biecek, Przemysław
author_sort Hryniewska, Weronika
collection PubMed
description The sudden outbreak and uncontrolled spread of COVID-19 disease is one of the most important global problems today. In a short period of time, it has led to the development of many deep neural network models for COVID-19 detection with modules for explainability. In this work, we carry out a systematic analysis of various aspects of proposed models. Our analysis revealed numerous mistakes made at different stages of data acquisition, model development, and explanation construction. In this work, we overview the approaches proposed in the surveyed Machine Learning articles and indicate typical errors emerging from the lack of deep understanding of the radiography domain. We present the perspective of both: experts in the field - radiologists and deep learning engineers dealing with model explanations. The final result is a proposed checklist with the minimum conditions to be met by a reliable COVID-19 diagnostic model.
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spelling pubmed-81394422021-05-24 Checklist for responsible deep learning modeling of medical images based on COVID-19 detection studies Hryniewska, Weronika Bombiński, Przemysław Szatkowski, Patryk Tomaszewska, Paulina Przelaskowski, Artur Biecek, Przemysław Pattern Recognit Article The sudden outbreak and uncontrolled spread of COVID-19 disease is one of the most important global problems today. In a short period of time, it has led to the development of many deep neural network models for COVID-19 detection with modules for explainability. In this work, we carry out a systematic analysis of various aspects of proposed models. Our analysis revealed numerous mistakes made at different stages of data acquisition, model development, and explanation construction. In this work, we overview the approaches proposed in the surveyed Machine Learning articles and indicate typical errors emerging from the lack of deep understanding of the radiography domain. We present the perspective of both: experts in the field - radiologists and deep learning engineers dealing with model explanations. The final result is a proposed checklist with the minimum conditions to be met by a reliable COVID-19 diagnostic model. The Author(s). Published by Elsevier Ltd. 2021-10 2021-05-21 /pmc/articles/PMC8139442/ /pubmed/34054148 http://dx.doi.org/10.1016/j.patcog.2021.108035 Text en © 2021 The Author(s) Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Hryniewska, Weronika
Bombiński, Przemysław
Szatkowski, Patryk
Tomaszewska, Paulina
Przelaskowski, Artur
Biecek, Przemysław
Checklist for responsible deep learning modeling of medical images based on COVID-19 detection studies
title Checklist for responsible deep learning modeling of medical images based on COVID-19 detection studies
title_full Checklist for responsible deep learning modeling of medical images based on COVID-19 detection studies
title_fullStr Checklist for responsible deep learning modeling of medical images based on COVID-19 detection studies
title_full_unstemmed Checklist for responsible deep learning modeling of medical images based on COVID-19 detection studies
title_short Checklist for responsible deep learning modeling of medical images based on COVID-19 detection studies
title_sort checklist for responsible deep learning modeling of medical images based on covid-19 detection studies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8139442/
https://www.ncbi.nlm.nih.gov/pubmed/34054148
http://dx.doi.org/10.1016/j.patcog.2021.108035
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