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Calculation of absolute molecular entropies and heat capacities made simple

We propose a fully-automated composite scheme for the accurate and numerically stable calculation of molecular entropies by efficiently combining density-functional theory (DFT), semi-empirical methods (SQM), and force-field (FF) approximations. The scheme is systematically expandable and can be int...

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Autores principales: Pracht, Philipp, Grimme, Stefan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8139639/
https://www.ncbi.nlm.nih.gov/pubmed/34040731
http://dx.doi.org/10.1039/d1sc00621e
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author Pracht, Philipp
Grimme, Stefan
author_facet Pracht, Philipp
Grimme, Stefan
author_sort Pracht, Philipp
collection PubMed
description We propose a fully-automated composite scheme for the accurate and numerically stable calculation of molecular entropies by efficiently combining density-functional theory (DFT), semi-empirical methods (SQM), and force-field (FF) approximations. The scheme is systematically expandable and can be integrated seamlessly with continuum-solvation models. Anharmonic effects are included through the modified rigid-rotor-harmonic-oscillator (msRRHO) approximation and the Gibbs–Shannon formula for extensive conformer ensembles (CEs), which are generated by a metadynamics search algorithm and are extrapolated to completeness. For the first time, variations of the ro-vibrational entropy over the CE are consistently accounted-for through a Boltzmann-population average. Extensive tests of the protocol with the two standard DFT approaches B97-3c and B3LYP-D3 reveal an unprecedented accuracy with mean deviations <1 cal mol(−1) K(−1) (about <1–2%) for the total gas phase molecular entropy of medium-sized molecules. Even for the hardship case of extremely flexible linear alkanes (C(14)H(30)–C(16)H(34)), errors are only about 3 cal mol(−1) K(−1). Comprehensive tests indicate a relatively strong variation of the conformational entropy on the underlying level of theory for typical drug molecules, inferring the complex potential energy surfaces as the main source of error. Furthermore, we show some application examples for the calculation of free energy differences in typical chemical reactions.
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spelling pubmed-81396392021-05-25 Calculation of absolute molecular entropies and heat capacities made simple Pracht, Philipp Grimme, Stefan Chem Sci Chemistry We propose a fully-automated composite scheme for the accurate and numerically stable calculation of molecular entropies by efficiently combining density-functional theory (DFT), semi-empirical methods (SQM), and force-field (FF) approximations. The scheme is systematically expandable and can be integrated seamlessly with continuum-solvation models. Anharmonic effects are included through the modified rigid-rotor-harmonic-oscillator (msRRHO) approximation and the Gibbs–Shannon formula for extensive conformer ensembles (CEs), which are generated by a metadynamics search algorithm and are extrapolated to completeness. For the first time, variations of the ro-vibrational entropy over the CE are consistently accounted-for through a Boltzmann-population average. Extensive tests of the protocol with the two standard DFT approaches B97-3c and B3LYP-D3 reveal an unprecedented accuracy with mean deviations <1 cal mol(−1) K(−1) (about <1–2%) for the total gas phase molecular entropy of medium-sized molecules. Even for the hardship case of extremely flexible linear alkanes (C(14)H(30)–C(16)H(34)), errors are only about 3 cal mol(−1) K(−1). Comprehensive tests indicate a relatively strong variation of the conformational entropy on the underlying level of theory for typical drug molecules, inferring the complex potential energy surfaces as the main source of error. Furthermore, we show some application examples for the calculation of free energy differences in typical chemical reactions. The Royal Society of Chemistry 2021-03-25 /pmc/articles/PMC8139639/ /pubmed/34040731 http://dx.doi.org/10.1039/d1sc00621e Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/
spellingShingle Chemistry
Pracht, Philipp
Grimme, Stefan
Calculation of absolute molecular entropies and heat capacities made simple
title Calculation of absolute molecular entropies and heat capacities made simple
title_full Calculation of absolute molecular entropies and heat capacities made simple
title_fullStr Calculation of absolute molecular entropies and heat capacities made simple
title_full_unstemmed Calculation of absolute molecular entropies and heat capacities made simple
title_short Calculation of absolute molecular entropies and heat capacities made simple
title_sort calculation of absolute molecular entropies and heat capacities made simple
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8139639/
https://www.ncbi.nlm.nih.gov/pubmed/34040731
http://dx.doi.org/10.1039/d1sc00621e
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