Cargando…

Genomic and cDNA selection-amplification identifies transcriptome-wide binding sites for the Drosophila protein sex-lethal

BACKGROUND: Downstream targets for a large number of RNA-binding proteins remain to be identified. The Drosophila master sex-switch protein Sex-lethal (SXL) is an RNA-binding protein that controls splicing, polyadenylation, or translation of certain mRNAs to mediate female-specific sexual differenti...

Descripción completa

Detalles Bibliográficos
Autores principales:	Banerjee, Hiren, Singh, Ravinder
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8143406/ https://www.ncbi.nlm.nih.gov/pubmed/34029324 http://dx.doi.org/10.1371/journal.pone.0250592

Ejemplares similares

Methods to Determine the Transcriptomes of Trypanosomes in Mixtures with Mammalian Cells: The Effects of Parasite Purification and Selective cDNA Amplification
por: Mulindwa, Julius, et al.
Publicado: (2014)

Molecular evolution of Drosophila Sex-lethal and related sex determining genes
por: Mullon, Charles, et al.
Publicado: (2012)

Drosophila Sister-of-Sex-lethal is a repressor of translation
por: Moschall, Rebecca, et al.
Publicado: (2018)

PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins
por: Hafner, Markus, et al.
Publicado: (2010)

Transcriptome analysis in primary neural stem cells using a tag cDNA amplification method
por: Sievertzon, Maria, et al.
Publicado: (2005)

Sex-lethal in neurons controls female body growth in Drosophila
por: Sawala, Annick, et al.
Publicado: (2018)

cDNA array-CGH profiling identifies genomic alterations specific to stage and MYCN-amplification in neuroblastoma
por: Chen, Qing-Rong, et al.
Publicado: (2004)

Drosophila Sister-of-Sex-lethal reinforces a male-specific gene expression pattern by controlling Sex-lethal alternative splicing
por: Moschall, Rebecca, et al.
Publicado: (2019)

Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome
por: Troskie, Robin-Lee, et al.
Publicado: (2021)

Dissection of the Inflammatory Bowel Disease Transcriptome Using Genome-Wide cDNA Microarrays
por: Costello, Christine M, et al.
Publicado: (2005)

Structure and Novel Functional Mechanism of Drosophila SNF in Sex-Lethal Splicing
por: Hu, Jicheng, et al.
Publicado: (2009)

Biochemical and Functional Analysis of Drosophila-Sciara Chimeric Sex-Lethal Proteins
por: Ruiz, María Fernanda, et al.
Publicado: (2013)

A Drosophila full-length cDNA resource
por: Stapleton, Mark, et al.
Publicado: (2002)

Protocol for qPCR analysis that corrects for cDNA amplification efficiency
por: Damgaard, Mads V., et al.
Publicado: (2022)

Analysis of the Effects of Sex Hormone Background on the Rat Choroid Plexus Transcriptome by cDNA Microarrays
por: Quintela, Telma, et al.
Publicado: (2013)

Components of variance in transcriptomics based on electrophoretic separation of cDNA fragments (cDNA-AFLP)
por: Weiberg, Arne, et al.
Publicado: (2009)

Sex-Biased Transcriptome Evolution in Drosophila
por: Assis, Raquel, et al.
Publicado: (2012)

Detection of HIV cDNA Point Mutations with Rolling-Circle Amplification Arrays
por: Wu, Lingwei, et al.
Publicado: (2010)

The Drosophila Nab2 RNA binding protein inhibits m(6)A methylation and male-specific splicing of Sex lethal transcript in female neuronal tissue
por: Jalloh, Binta, et al.
Publicado: (2023)

Effects of heavy metals on Drosophila larvae and a metallothionein cDNA.
por: Maroni, G, et al.
Publicado: (1986)

Quantifying RNA binding sites transcriptome-wide using DO-RIP-seq
por: Nicholson, Cindo O., et al.
Publicado: (2017)

Production of in vitro amplified DNA pseudolibraries and high-throughput cDNA target amplification
por: Frey, Daniel, et al.
Publicado: (2007)

Non-biased and efficient global amplification of a single-cell cDNA library
por: Huang, Huan, et al.
Publicado: (2014)

In Vitro Site Selection of a Consensus Binding Site for the Drosophila melanogaster Tbx20 Homolog Midline
por: Najand, Nima, et al.
Publicado: (2012)

Genome-Wide Transcriptome and Binding Sites Analyses Identify Early FOX Expressions for Enhancing Cardiomyogenesis Efficiency of hESC Cultures
por: Yeo, Hock Chuan, et al.
Publicado: (2016)

Transcriptome-wide analysis of pseudouridylation in Drosophila melanogaster
por: Song, Wan, et al.
Publicado: (2022)

Robust transcriptome-wide discovery of RNA binding protein binding sites with enhanced CLIP (eCLIP)
por: Van Nostrand, Eric L., et al.
Publicado: (2016)

Use of cDNA Tiling Arrays for Identifying Protein Interactions Selected by In Vitro Display Technologies
por: Horisawa, Kenichi, et al.
Publicado: (2008)

In-Frame cDNA Library Combined with Protein Complementation Assay Identifies ARL11-Binding Partners
por: Lee, Sangkyou, et al.
Publicado: (2012)

PPS, a Large Multidomain Protein, Functions with Sex-Lethal to Regulate Alternative Splicing in Drosophila
por: Johnson, Matthew L., et al.
Publicado: (2010)

Promiscuity in post‐transcriptional control of gene expression: Drosophila sex‐lethal and its regulatory partnerships
por: Moschall, Rebecca, et al.
Publicado: (2017)

De novo transcriptome assembly reveals sex-specific selection acting on evolving neo-sex chromosomes in Drosophila miranda
por: Kaiser, Vera B, et al.
Publicado: (2014)

Optimization and evaluation of T7 based RNA linear amplification protocols for cDNA microarray analysis
por: Zhao, Hongjuan, et al.
Publicado: (2002)

Eukaryotic transcriptomics in silico: Optimizing cDNA-AFLP efficiency
por: Stölting, Kai N, et al.
Publicado: (2009)

High Throughput Sequencing Identifies Misregulated Genes in the Drosophila Polypyrimidine Tract-Binding Protein (hephaestus) Mutant Defective in Spermatogenesis
por: Sridharan, Vinod, et al.
Publicado: (2016)

Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins
por: Zeng, Jue, et al.
Publicado: (2008)

Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins
por: Nagarajan, R., et al.
Publicado: (2013)

DNA sequence templates adjacent nucleosome and ORC sites at gene amplification origins in Drosophila
por: Liu, Jun, et al.
Publicado: (2015)

Cells transfected with human interleukin 6 cDNA acquire binding sites for the hepatitis B virus envelope protein
Publicado: (1992)

Cancer immunotherapy using novel tumor-associated antigenic peptides identified by genome-wide cDNA microarray analyses
por: Nishimura, Yasuharu, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_7nmhtumnuuj7s5lg5t4jok83g7