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A Novel Hybrid Monte Carlo Algorithm for Sampling Path Space
To sample from complex, high-dimensional distributions, one may choose algorithms based on the Hybrid Monte Carlo (HMC) method. HMC-based algorithms generate nonlocal moves alleviating diffusive behavior. Here, I build on an already defined HMC framework, hybrid Monte Carlo on Hilbert spaces (Beskos...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8143484/ https://www.ncbi.nlm.nih.gov/pubmed/33922040 http://dx.doi.org/10.3390/e23050499 |
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author | Pinski, Francis J. |
author_facet | Pinski, Francis J. |
author_sort | Pinski, Francis J. |
collection | PubMed |
description | To sample from complex, high-dimensional distributions, one may choose algorithms based on the Hybrid Monte Carlo (HMC) method. HMC-based algorithms generate nonlocal moves alleviating diffusive behavior. Here, I build on an already defined HMC framework, hybrid Monte Carlo on Hilbert spaces (Beskos, et al. Stoch. Proc. Applic. 2011), that provides finite-dimensional approximations of measures [Formula: see text] , which have density with respect to a Gaussian measure on an infinite-dimensional Hilbert (path) space. In all HMC algorithms, one has some freedom to choose the mass operator. The novel feature of the algorithm described in this article lies in the choice of this operator. This new choice defines a Markov Chain Monte Carlo (MCMC) method that is well defined on the Hilbert space itself. As before, the algorithm described herein uses an enlarged phase space [Formula: see text] having the target [Formula: see text] as a marginal, together with a Hamiltonian flow that preserves [Formula: see text]. In the previous work, the authors explored a method where the phase space [Formula: see text] was augmented with Brownian bridges. With this new choice, [Formula: see text] is augmented by Ornstein–Uhlenbeck (OU) bridges. The covariance of Brownian bridges grows with its length, which has negative effects on the acceptance rate in the MCMC method. This contrasts with the covariance of OU bridges, which is independent of the path length. The ingredients of the new algorithm include the definition of the mass operator, the equations for the Hamiltonian flow, the (approximate) numerical integration of the evolution equations, and finally, the Metropolis–Hastings acceptance rule. Taken together, these constitute a robust method for sampling the target distribution in an almost dimension-free manner. The behavior of this novel algorithm is demonstrated by computer experiments for a particle moving in two dimensions, between two free-energy basins separated by an entropic barrier. |
format | Online Article Text |
id | pubmed-8143484 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81434842021-05-25 A Novel Hybrid Monte Carlo Algorithm for Sampling Path Space Pinski, Francis J. Entropy (Basel) Article To sample from complex, high-dimensional distributions, one may choose algorithms based on the Hybrid Monte Carlo (HMC) method. HMC-based algorithms generate nonlocal moves alleviating diffusive behavior. Here, I build on an already defined HMC framework, hybrid Monte Carlo on Hilbert spaces (Beskos, et al. Stoch. Proc. Applic. 2011), that provides finite-dimensional approximations of measures [Formula: see text] , which have density with respect to a Gaussian measure on an infinite-dimensional Hilbert (path) space. In all HMC algorithms, one has some freedom to choose the mass operator. The novel feature of the algorithm described in this article lies in the choice of this operator. This new choice defines a Markov Chain Monte Carlo (MCMC) method that is well defined on the Hilbert space itself. As before, the algorithm described herein uses an enlarged phase space [Formula: see text] having the target [Formula: see text] as a marginal, together with a Hamiltonian flow that preserves [Formula: see text]. In the previous work, the authors explored a method where the phase space [Formula: see text] was augmented with Brownian bridges. With this new choice, [Formula: see text] is augmented by Ornstein–Uhlenbeck (OU) bridges. The covariance of Brownian bridges grows with its length, which has negative effects on the acceptance rate in the MCMC method. This contrasts with the covariance of OU bridges, which is independent of the path length. The ingredients of the new algorithm include the definition of the mass operator, the equations for the Hamiltonian flow, the (approximate) numerical integration of the evolution equations, and finally, the Metropolis–Hastings acceptance rule. Taken together, these constitute a robust method for sampling the target distribution in an almost dimension-free manner. The behavior of this novel algorithm is demonstrated by computer experiments for a particle moving in two dimensions, between two free-energy basins separated by an entropic barrier. MDPI 2021-04-22 /pmc/articles/PMC8143484/ /pubmed/33922040 http://dx.doi.org/10.3390/e23050499 Text en © 2021 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Pinski, Francis J. A Novel Hybrid Monte Carlo Algorithm for Sampling Path Space |
title | A Novel Hybrid Monte Carlo Algorithm for Sampling Path Space |
title_full | A Novel Hybrid Monte Carlo Algorithm for Sampling Path Space |
title_fullStr | A Novel Hybrid Monte Carlo Algorithm for Sampling Path Space |
title_full_unstemmed | A Novel Hybrid Monte Carlo Algorithm for Sampling Path Space |
title_short | A Novel Hybrid Monte Carlo Algorithm for Sampling Path Space |
title_sort | novel hybrid monte carlo algorithm for sampling path space |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8143484/ https://www.ncbi.nlm.nih.gov/pubmed/33922040 http://dx.doi.org/10.3390/e23050499 |
work_keys_str_mv | AT pinskifrancisj anovelhybridmontecarloalgorithmforsamplingpathspace AT pinskifrancisj novelhybridmontecarloalgorithmforsamplingpathspace |