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The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae)

Trapa (Lythraceae) is an economically important aquatic genus used for food and medicine, with wide distribution in Asia, Africa, and Europe. Identification of species, genetic studies and utilization of Trapa are limited by lack of molecular data. Herein, we report the complete chloroplast (cp) gen...

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Autores principales: Wagutu, Godfrey Kinyori, Fan, Xiangrong, Wang, Wuchao, Li, Wei, Chen, Yuanyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8143615/
https://www.ncbi.nlm.nih.gov/pubmed/34104734
http://dx.doi.org/10.1080/23802359.2021.1927873
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author Wagutu, Godfrey Kinyori
Fan, Xiangrong
Wang, Wuchao
Li, Wei
Chen, Yuanyuan
author_facet Wagutu, Godfrey Kinyori
Fan, Xiangrong
Wang, Wuchao
Li, Wei
Chen, Yuanyuan
author_sort Wagutu, Godfrey Kinyori
collection PubMed
description Trapa (Lythraceae) is an economically important aquatic genus used for food and medicine, with wide distribution in Asia, Africa, and Europe. Identification of species, genetic studies and utilization of Trapa are limited by lack of molecular data. Herein, we report the complete chloroplast (cp) genome sequence of a wild species, Trapa kozhevnikoviorum Pshenn. The cp genome size of T. kozhevnikoviorum is 155,545 bp, consisting of a pair of inverted repeat regions (IRa/IRb) of length 24,388 bp, separated by the small single copy (SSC) region of 18,275 bp and a large single copy (LSC) region of 88,494 bp. A total of 113 unique genes, including 79 protein-coding, 30 tRNA, and four rRNA were annotated. Phylogenetic analysis based on 15 whole cp genomes of Lythraceae species supported the monophyletic clustering of Trapa. A cladal relationship among T. kozhevnikoviorum, T. bicornis, and T. natans was revealed.
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spelling pubmed-81436152021-06-07 The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae) Wagutu, Godfrey Kinyori Fan, Xiangrong Wang, Wuchao Li, Wei Chen, Yuanyuan Mitochondrial DNA B Resour Mitogenome Announcement Trapa (Lythraceae) is an economically important aquatic genus used for food and medicine, with wide distribution in Asia, Africa, and Europe. Identification of species, genetic studies and utilization of Trapa are limited by lack of molecular data. Herein, we report the complete chloroplast (cp) genome sequence of a wild species, Trapa kozhevnikoviorum Pshenn. The cp genome size of T. kozhevnikoviorum is 155,545 bp, consisting of a pair of inverted repeat regions (IRa/IRb) of length 24,388 bp, separated by the small single copy (SSC) region of 18,275 bp and a large single copy (LSC) region of 88,494 bp. A total of 113 unique genes, including 79 protein-coding, 30 tRNA, and four rRNA were annotated. Phylogenetic analysis based on 15 whole cp genomes of Lythraceae species supported the monophyletic clustering of Trapa. A cladal relationship among T. kozhevnikoviorum, T. bicornis, and T. natans was revealed. Taylor & Francis 2021-05-19 /pmc/articles/PMC8143615/ /pubmed/34104734 http://dx.doi.org/10.1080/23802359.2021.1927873 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wagutu, Godfrey Kinyori
Fan, Xiangrong
Wang, Wuchao
Li, Wei
Chen, Yuanyuan
The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae)
title The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae)
title_full The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae)
title_fullStr The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae)
title_full_unstemmed The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae)
title_short The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae)
title_sort complete chloroplast genome sequence of trapa kozhevnikoviorum pshenn. (lythraceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8143615/
https://www.ncbi.nlm.nih.gov/pubmed/34104734
http://dx.doi.org/10.1080/23802359.2021.1927873
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