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The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae)
Trapa (Lythraceae) is an economically important aquatic genus used for food and medicine, with wide distribution in Asia, Africa, and Europe. Identification of species, genetic studies and utilization of Trapa are limited by lack of molecular data. Herein, we report the complete chloroplast (cp) gen...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8143615/ https://www.ncbi.nlm.nih.gov/pubmed/34104734 http://dx.doi.org/10.1080/23802359.2021.1927873 |
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author | Wagutu, Godfrey Kinyori Fan, Xiangrong Wang, Wuchao Li, Wei Chen, Yuanyuan |
author_facet | Wagutu, Godfrey Kinyori Fan, Xiangrong Wang, Wuchao Li, Wei Chen, Yuanyuan |
author_sort | Wagutu, Godfrey Kinyori |
collection | PubMed |
description | Trapa (Lythraceae) is an economically important aquatic genus used for food and medicine, with wide distribution in Asia, Africa, and Europe. Identification of species, genetic studies and utilization of Trapa are limited by lack of molecular data. Herein, we report the complete chloroplast (cp) genome sequence of a wild species, Trapa kozhevnikoviorum Pshenn. The cp genome size of T. kozhevnikoviorum is 155,545 bp, consisting of a pair of inverted repeat regions (IRa/IRb) of length 24,388 bp, separated by the small single copy (SSC) region of 18,275 bp and a large single copy (LSC) region of 88,494 bp. A total of 113 unique genes, including 79 protein-coding, 30 tRNA, and four rRNA were annotated. Phylogenetic analysis based on 15 whole cp genomes of Lythraceae species supported the monophyletic clustering of Trapa. A cladal relationship among T. kozhevnikoviorum, T. bicornis, and T. natans was revealed. |
format | Online Article Text |
id | pubmed-8143615 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-81436152021-06-07 The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae) Wagutu, Godfrey Kinyori Fan, Xiangrong Wang, Wuchao Li, Wei Chen, Yuanyuan Mitochondrial DNA B Resour Mitogenome Announcement Trapa (Lythraceae) is an economically important aquatic genus used for food and medicine, with wide distribution in Asia, Africa, and Europe. Identification of species, genetic studies and utilization of Trapa are limited by lack of molecular data. Herein, we report the complete chloroplast (cp) genome sequence of a wild species, Trapa kozhevnikoviorum Pshenn. The cp genome size of T. kozhevnikoviorum is 155,545 bp, consisting of a pair of inverted repeat regions (IRa/IRb) of length 24,388 bp, separated by the small single copy (SSC) region of 18,275 bp and a large single copy (LSC) region of 88,494 bp. A total of 113 unique genes, including 79 protein-coding, 30 tRNA, and four rRNA were annotated. Phylogenetic analysis based on 15 whole cp genomes of Lythraceae species supported the monophyletic clustering of Trapa. A cladal relationship among T. kozhevnikoviorum, T. bicornis, and T. natans was revealed. Taylor & Francis 2021-05-19 /pmc/articles/PMC8143615/ /pubmed/34104734 http://dx.doi.org/10.1080/23802359.2021.1927873 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Wagutu, Godfrey Kinyori Fan, Xiangrong Wang, Wuchao Li, Wei Chen, Yuanyuan The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae) |
title | The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae) |
title_full | The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae) |
title_fullStr | The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae) |
title_short | The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae) |
title_sort | complete chloroplast genome sequence of trapa kozhevnikoviorum pshenn. (lythraceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8143615/ https://www.ncbi.nlm.nih.gov/pubmed/34104734 http://dx.doi.org/10.1080/23802359.2021.1927873 |
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