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The complete chloroplast genome of Walla Patta, Gyrinops walla (Thymelaeaceae), an agarwood-producing tree species from Sri Lanka

Gyrinops walla is an important agarwood-producing tree and threatened species from Sri Lanka. Herein, we assembled and characterized the complete chloroplast (cp) genome of G. walla as a genomic resource for conservation purposes. The 175,130 bp long genome is comprised of 87,376 bp large single-cop...

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Autores principales: Chen, Jingrui, Lee, Shiou Yih, Munugoda, K. D., Mohamed, Rozi, Subasinghe, S. M. C. U. P., Liao, Wenbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8143619/
https://www.ncbi.nlm.nih.gov/pubmed/34104743
http://dx.doi.org/10.1080/23802359.2021.1926362
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author Chen, Jingrui
Lee, Shiou Yih
Munugoda, K. D.
Mohamed, Rozi
Subasinghe, S. M. C. U. P.
Liao, Wenbo
author_facet Chen, Jingrui
Lee, Shiou Yih
Munugoda, K. D.
Mohamed, Rozi
Subasinghe, S. M. C. U. P.
Liao, Wenbo
author_sort Chen, Jingrui
collection PubMed
description Gyrinops walla is an important agarwood-producing tree and threatened species from Sri Lanka. Herein, we assembled and characterized the complete chloroplast (cp) genome of G. walla as a genomic resource for conservation purposes. The 175,130 bp long genome is comprised of 87,376 bp large single-copy (LSC) and 3316 bp small single-copy (SSC) regions, which are separated by two inverted repeat (IR) region, each with a size of 42,291 bp. A total of 140 genes were predicted for the cp genome, which includes 94 protein-coding, 38 tRNA, and eight rRNA genes. Phylogenetic analysis showed that G. walla is fully resolved in a sister position to Aquilaria in the family Thymelaeaceae. The data provided will be useful for study on the molecular phylogenetics and evolution of Thymelaeaceae in the future.
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spelling pubmed-81436192021-06-07 The complete chloroplast genome of Walla Patta, Gyrinops walla (Thymelaeaceae), an agarwood-producing tree species from Sri Lanka Chen, Jingrui Lee, Shiou Yih Munugoda, K. D. Mohamed, Rozi Subasinghe, S. M. C. U. P. Liao, Wenbo Mitochondrial DNA B Resour Mitogenome Announcement Gyrinops walla is an important agarwood-producing tree and threatened species from Sri Lanka. Herein, we assembled and characterized the complete chloroplast (cp) genome of G. walla as a genomic resource for conservation purposes. The 175,130 bp long genome is comprised of 87,376 bp large single-copy (LSC) and 3316 bp small single-copy (SSC) regions, which are separated by two inverted repeat (IR) region, each with a size of 42,291 bp. A total of 140 genes were predicted for the cp genome, which includes 94 protein-coding, 38 tRNA, and eight rRNA genes. Phylogenetic analysis showed that G. walla is fully resolved in a sister position to Aquilaria in the family Thymelaeaceae. The data provided will be useful for study on the molecular phylogenetics and evolution of Thymelaeaceae in the future. Taylor & Francis 2021-05-19 /pmc/articles/PMC8143619/ /pubmed/34104743 http://dx.doi.org/10.1080/23802359.2021.1926362 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Jingrui
Lee, Shiou Yih
Munugoda, K. D.
Mohamed, Rozi
Subasinghe, S. M. C. U. P.
Liao, Wenbo
The complete chloroplast genome of Walla Patta, Gyrinops walla (Thymelaeaceae), an agarwood-producing tree species from Sri Lanka
title The complete chloroplast genome of Walla Patta, Gyrinops walla (Thymelaeaceae), an agarwood-producing tree species from Sri Lanka
title_full The complete chloroplast genome of Walla Patta, Gyrinops walla (Thymelaeaceae), an agarwood-producing tree species from Sri Lanka
title_fullStr The complete chloroplast genome of Walla Patta, Gyrinops walla (Thymelaeaceae), an agarwood-producing tree species from Sri Lanka
title_full_unstemmed The complete chloroplast genome of Walla Patta, Gyrinops walla (Thymelaeaceae), an agarwood-producing tree species from Sri Lanka
title_short The complete chloroplast genome of Walla Patta, Gyrinops walla (Thymelaeaceae), an agarwood-producing tree species from Sri Lanka
title_sort complete chloroplast genome of walla patta, gyrinops walla (thymelaeaceae), an agarwood-producing tree species from sri lanka
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8143619/
https://www.ncbi.nlm.nih.gov/pubmed/34104743
http://dx.doi.org/10.1080/23802359.2021.1926362
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