Cargando…

Differential microbial assemblages associated with shikonin-producing Borage species in two distinct soil types

Shikonin and its derivatives are the main components of traditional Chinese medicine, Zicao. The pharmacological potential of shikonin and its derivatives have been extensively studied. Yet, less is known about the microbial assemblages associated with shikonin producing Borage plants. We studied mi...

Descripción completa

Detalles Bibliográficos
Autores principales: Fazal, Aliya, Yang, Minkai, Wen, Zhongling, Ali, Farman, Ren, Ran, Hao, Chenyu, Chen, Xingyu, Fu, Jiangyan, Wang, Xuan, Jie, Wencai, Yin, Tongming, Lu, Guihua, Qi, Jinliang, Yang, Yonghua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8144371/
https://www.ncbi.nlm.nih.gov/pubmed/34031500
http://dx.doi.org/10.1038/s41598-021-90251-1
_version_ 1783696942368292864
author Fazal, Aliya
Yang, Minkai
Wen, Zhongling
Ali, Farman
Ren, Ran
Hao, Chenyu
Chen, Xingyu
Fu, Jiangyan
Wang, Xuan
Jie, Wencai
Yin, Tongming
Lu, Guihua
Qi, Jinliang
Yang, Yonghua
author_facet Fazal, Aliya
Yang, Minkai
Wen, Zhongling
Ali, Farman
Ren, Ran
Hao, Chenyu
Chen, Xingyu
Fu, Jiangyan
Wang, Xuan
Jie, Wencai
Yin, Tongming
Lu, Guihua
Qi, Jinliang
Yang, Yonghua
author_sort Fazal, Aliya
collection PubMed
description Shikonin and its derivatives are the main components of traditional Chinese medicine, Zicao. The pharmacological potential of shikonin and its derivatives have been extensively studied. Yet, less is known about the microbial assemblages associated with shikonin producing Borage plants. We studied microbial profiles of two Borage species, Echium plantagineum (EP) and Lithospermum erythrorhizon (LE), to identify the dynamics of microbial colonization pattern within three rhizo-compatments and two distinct soil types. Results of α and β-diversity via PacBio sequencing revealed significantly higher microbial richness and diversity in the natural soil along with a decreasing microbial gradient across rhizosphere to endosphere. Our results displayed genotype and soil type–dependent fine-tuning of microbial profiles. The host plant was found to exert effects on the physical and chemical properties of soil, resulting in reproducibly different micro-biota. Analysis of differentially abundant microbial OTUs displayed Planctomycetes and Bacteroidetes to be specifically enriched in EP and LE rhizosphere while endosphere was mostly prevailed by Cyanobacteria. Network analysis to unfold co-existing microbial species displayed different types of positive and negative interactions within different communities. The data provided here will help to identify microbes associated with different rhizo-compartments of potential host plants. In the future, this might be helpful for manipulating the keystone microbes for ecosystem functioning.
format Online
Article
Text
id pubmed-8144371
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-81443712021-05-25 Differential microbial assemblages associated with shikonin-producing Borage species in two distinct soil types Fazal, Aliya Yang, Minkai Wen, Zhongling Ali, Farman Ren, Ran Hao, Chenyu Chen, Xingyu Fu, Jiangyan Wang, Xuan Jie, Wencai Yin, Tongming Lu, Guihua Qi, Jinliang Yang, Yonghua Sci Rep Article Shikonin and its derivatives are the main components of traditional Chinese medicine, Zicao. The pharmacological potential of shikonin and its derivatives have been extensively studied. Yet, less is known about the microbial assemblages associated with shikonin producing Borage plants. We studied microbial profiles of two Borage species, Echium plantagineum (EP) and Lithospermum erythrorhizon (LE), to identify the dynamics of microbial colonization pattern within three rhizo-compatments and two distinct soil types. Results of α and β-diversity via PacBio sequencing revealed significantly higher microbial richness and diversity in the natural soil along with a decreasing microbial gradient across rhizosphere to endosphere. Our results displayed genotype and soil type–dependent fine-tuning of microbial profiles. The host plant was found to exert effects on the physical and chemical properties of soil, resulting in reproducibly different micro-biota. Analysis of differentially abundant microbial OTUs displayed Planctomycetes and Bacteroidetes to be specifically enriched in EP and LE rhizosphere while endosphere was mostly prevailed by Cyanobacteria. Network analysis to unfold co-existing microbial species displayed different types of positive and negative interactions within different communities. The data provided here will help to identify microbes associated with different rhizo-compartments of potential host plants. In the future, this might be helpful for manipulating the keystone microbes for ecosystem functioning. Nature Publishing Group UK 2021-05-24 /pmc/articles/PMC8144371/ /pubmed/34031500 http://dx.doi.org/10.1038/s41598-021-90251-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Fazal, Aliya
Yang, Minkai
Wen, Zhongling
Ali, Farman
Ren, Ran
Hao, Chenyu
Chen, Xingyu
Fu, Jiangyan
Wang, Xuan
Jie, Wencai
Yin, Tongming
Lu, Guihua
Qi, Jinliang
Yang, Yonghua
Differential microbial assemblages associated with shikonin-producing Borage species in two distinct soil types
title Differential microbial assemblages associated with shikonin-producing Borage species in two distinct soil types
title_full Differential microbial assemblages associated with shikonin-producing Borage species in two distinct soil types
title_fullStr Differential microbial assemblages associated with shikonin-producing Borage species in two distinct soil types
title_full_unstemmed Differential microbial assemblages associated with shikonin-producing Borage species in two distinct soil types
title_short Differential microbial assemblages associated with shikonin-producing Borage species in two distinct soil types
title_sort differential microbial assemblages associated with shikonin-producing borage species in two distinct soil types
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8144371/
https://www.ncbi.nlm.nih.gov/pubmed/34031500
http://dx.doi.org/10.1038/s41598-021-90251-1
work_keys_str_mv AT fazalaliya differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT yangminkai differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT wenzhongling differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT alifarman differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT renran differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT haochenyu differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT chenxingyu differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT fujiangyan differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT wangxuan differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT jiewencai differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT yintongming differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT luguihua differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT qijinliang differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes
AT yangyonghua differentialmicrobialassemblagesassociatedwithshikoninproducingboragespeciesintwodistinctsoiltypes