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Reconciling Simulations and Experiments With BICePs: A Review
Bayesian Inference of Conformational Populations (BICePs) is an algorithm developed to reconcile simulated ensembles with sparse experimental measurements. The Bayesian framework of BICePs enables population reweighting as a post-simulation processing step, with several advantages over existing meth...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8144449/ https://www.ncbi.nlm.nih.gov/pubmed/34046431 http://dx.doi.org/10.3389/fmolb.2021.661520 |
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author | Voelz, Vincent A. Ge, Yunhui Raddi, Robert M. |
author_facet | Voelz, Vincent A. Ge, Yunhui Raddi, Robert M. |
author_sort | Voelz, Vincent A. |
collection | PubMed |
description | Bayesian Inference of Conformational Populations (BICePs) is an algorithm developed to reconcile simulated ensembles with sparse experimental measurements. The Bayesian framework of BICePs enables population reweighting as a post-simulation processing step, with several advantages over existing methods, including the proper use of reference potentials, and the estimation of a Bayes factor-like quantity called the BICePs score for model selection. Here, we summarize the theory underlying this method in context with related algorithms, review the history of BICePs applications to date, and discuss current shortcomings along with future plans for improvement. |
format | Online Article Text |
id | pubmed-8144449 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81444492021-05-26 Reconciling Simulations and Experiments With BICePs: A Review Voelz, Vincent A. Ge, Yunhui Raddi, Robert M. Front Mol Biosci Molecular Biosciences Bayesian Inference of Conformational Populations (BICePs) is an algorithm developed to reconcile simulated ensembles with sparse experimental measurements. The Bayesian framework of BICePs enables population reweighting as a post-simulation processing step, with several advantages over existing methods, including the proper use of reference potentials, and the estimation of a Bayes factor-like quantity called the BICePs score for model selection. Here, we summarize the theory underlying this method in context with related algorithms, review the history of BICePs applications to date, and discuss current shortcomings along with future plans for improvement. Frontiers Media S.A. 2021-05-11 /pmc/articles/PMC8144449/ /pubmed/34046431 http://dx.doi.org/10.3389/fmolb.2021.661520 Text en Copyright © 2021 Voelz, Ge and Raddi. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Voelz, Vincent A. Ge, Yunhui Raddi, Robert M. Reconciling Simulations and Experiments With BICePs: A Review |
title | Reconciling Simulations and Experiments With BICePs: A Review |
title_full | Reconciling Simulations and Experiments With BICePs: A Review |
title_fullStr | Reconciling Simulations and Experiments With BICePs: A Review |
title_full_unstemmed | Reconciling Simulations and Experiments With BICePs: A Review |
title_short | Reconciling Simulations and Experiments With BICePs: A Review |
title_sort | reconciling simulations and experiments with biceps: a review |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8144449/ https://www.ncbi.nlm.nih.gov/pubmed/34046431 http://dx.doi.org/10.3389/fmolb.2021.661520 |
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