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Reconciling Simulations and Experiments With BICePs: A Review

Bayesian Inference of Conformational Populations (BICePs) is an algorithm developed to reconcile simulated ensembles with sparse experimental measurements. The Bayesian framework of BICePs enables population reweighting as a post-simulation processing step, with several advantages over existing meth...

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Detalles Bibliográficos
Autores principales: Voelz, Vincent A., Ge, Yunhui, Raddi, Robert M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8144449/
https://www.ncbi.nlm.nih.gov/pubmed/34046431
http://dx.doi.org/10.3389/fmolb.2021.661520
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author Voelz, Vincent A.
Ge, Yunhui
Raddi, Robert M.
author_facet Voelz, Vincent A.
Ge, Yunhui
Raddi, Robert M.
author_sort Voelz, Vincent A.
collection PubMed
description Bayesian Inference of Conformational Populations (BICePs) is an algorithm developed to reconcile simulated ensembles with sparse experimental measurements. The Bayesian framework of BICePs enables population reweighting as a post-simulation processing step, with several advantages over existing methods, including the proper use of reference potentials, and the estimation of a Bayes factor-like quantity called the BICePs score for model selection. Here, we summarize the theory underlying this method in context with related algorithms, review the history of BICePs applications to date, and discuss current shortcomings along with future plans for improvement.
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spelling pubmed-81444492021-05-26 Reconciling Simulations and Experiments With BICePs: A Review Voelz, Vincent A. Ge, Yunhui Raddi, Robert M. Front Mol Biosci Molecular Biosciences Bayesian Inference of Conformational Populations (BICePs) is an algorithm developed to reconcile simulated ensembles with sparse experimental measurements. The Bayesian framework of BICePs enables population reweighting as a post-simulation processing step, with several advantages over existing methods, including the proper use of reference potentials, and the estimation of a Bayes factor-like quantity called the BICePs score for model selection. Here, we summarize the theory underlying this method in context with related algorithms, review the history of BICePs applications to date, and discuss current shortcomings along with future plans for improvement. Frontiers Media S.A. 2021-05-11 /pmc/articles/PMC8144449/ /pubmed/34046431 http://dx.doi.org/10.3389/fmolb.2021.661520 Text en Copyright © 2021 Voelz, Ge and Raddi. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Voelz, Vincent A.
Ge, Yunhui
Raddi, Robert M.
Reconciling Simulations and Experiments With BICePs: A Review
title Reconciling Simulations and Experiments With BICePs: A Review
title_full Reconciling Simulations and Experiments With BICePs: A Review
title_fullStr Reconciling Simulations and Experiments With BICePs: A Review
title_full_unstemmed Reconciling Simulations and Experiments With BICePs: A Review
title_short Reconciling Simulations and Experiments With BICePs: A Review
title_sort reconciling simulations and experiments with biceps: a review
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8144449/
https://www.ncbi.nlm.nih.gov/pubmed/34046431
http://dx.doi.org/10.3389/fmolb.2021.661520
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