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Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms
SIMPLE SUMMARY: First, the current work consisted of validating the feasibility of large-scale dairy cow bodyweight prediction from models involving the day in milk, milk yield, parity, and milk mid-infrared spectrum. Second, it aimed to improve the accuracy of predictive models by using feature sel...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8145206/ https://www.ncbi.nlm.nih.gov/pubmed/33946238 http://dx.doi.org/10.3390/ani11051288 |
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author | Tedde, Anthony Grelet, Clément Ho, Phuong N. Pryce, Jennie E. Hailemariam, Dagnachew Wang, Zhiquan Plastow, Graham Gengler, Nicolas Brostaux, Yves Froidmont, Eric Dehareng, Frédéric Bertozzi, Carlo Crowe, Mark A. Dufrasne, Isabelle Soyeurt, Hélène |
author_facet | Tedde, Anthony Grelet, Clément Ho, Phuong N. Pryce, Jennie E. Hailemariam, Dagnachew Wang, Zhiquan Plastow, Graham Gengler, Nicolas Brostaux, Yves Froidmont, Eric Dehareng, Frédéric Bertozzi, Carlo Crowe, Mark A. Dufrasne, Isabelle Soyeurt, Hélène |
author_sort | Tedde, Anthony |
collection | PubMed |
description | SIMPLE SUMMARY: First, the current work consisted of validating the feasibility of large-scale dairy cow bodyweight prediction from models involving the day in milk, milk yield, parity, and milk mid-infrared spectrum. Second, it aimed to improve the accuracy of predictive models by using feature selection algorithms to decrease the number of predictors to limit overfitting. The models, using accessible and low-cost measurements, provided highly reproducible predictions. These could be easily obtained on an individual basis throughout a cow’s productive life by dairy herd improvement organizations, thus providing potentially relevant information for the dairy farmer at three levels: economics (reproductive performance), animal welfare (disease detection), and environment (methane production). ABSTRACT: Knowing the body weight (BW) of a cow at a specific moment or measuring its changes through time is of interest for management purposes. The current work aimed to validate the feasibility of predicting BW using the day in milk, parity, milk yield, and milk mid-infrared (MIR) spectrum from a multiple-country dataset and reduce the number of predictors to limit the risk of over-fitting and potentially improve its accuracy. The BW modeling procedure involved feature selections and herd-independent validation in identifying the most interesting subsets of predictors and then external validation of the models. From 1849 records collected in 9 herds from 360 Holstein cows, the best performing models achieved a root mean square error (RMSE) for the herd-independent validation between 52 ± 2.34 kg to 56 ± 3.16 kg, including from 5 to 62 predictors. Among these models, three performed remarkably well in external validation using an independent dataset (N = 4067), resulting in RMSE ranging from 52 to 56 kg. The results suggest that multiple optimal BW predictive models coexist due to the high correlations between adjacent spectral points. |
format | Online Article Text |
id | pubmed-8145206 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81452062021-05-26 Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms Tedde, Anthony Grelet, Clément Ho, Phuong N. Pryce, Jennie E. Hailemariam, Dagnachew Wang, Zhiquan Plastow, Graham Gengler, Nicolas Brostaux, Yves Froidmont, Eric Dehareng, Frédéric Bertozzi, Carlo Crowe, Mark A. Dufrasne, Isabelle Soyeurt, Hélène Animals (Basel) Article SIMPLE SUMMARY: First, the current work consisted of validating the feasibility of large-scale dairy cow bodyweight prediction from models involving the day in milk, milk yield, parity, and milk mid-infrared spectrum. Second, it aimed to improve the accuracy of predictive models by using feature selection algorithms to decrease the number of predictors to limit overfitting. The models, using accessible and low-cost measurements, provided highly reproducible predictions. These could be easily obtained on an individual basis throughout a cow’s productive life by dairy herd improvement organizations, thus providing potentially relevant information for the dairy farmer at three levels: economics (reproductive performance), animal welfare (disease detection), and environment (methane production). ABSTRACT: Knowing the body weight (BW) of a cow at a specific moment or measuring its changes through time is of interest for management purposes. The current work aimed to validate the feasibility of predicting BW using the day in milk, parity, milk yield, and milk mid-infrared (MIR) spectrum from a multiple-country dataset and reduce the number of predictors to limit the risk of over-fitting and potentially improve its accuracy. The BW modeling procedure involved feature selections and herd-independent validation in identifying the most interesting subsets of predictors and then external validation of the models. From 1849 records collected in 9 herds from 360 Holstein cows, the best performing models achieved a root mean square error (RMSE) for the herd-independent validation between 52 ± 2.34 kg to 56 ± 3.16 kg, including from 5 to 62 predictors. Among these models, three performed remarkably well in external validation using an independent dataset (N = 4067), resulting in RMSE ranging from 52 to 56 kg. The results suggest that multiple optimal BW predictive models coexist due to the high correlations between adjacent spectral points. MDPI 2021-04-30 /pmc/articles/PMC8145206/ /pubmed/33946238 http://dx.doi.org/10.3390/ani11051288 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Tedde, Anthony Grelet, Clément Ho, Phuong N. Pryce, Jennie E. Hailemariam, Dagnachew Wang, Zhiquan Plastow, Graham Gengler, Nicolas Brostaux, Yves Froidmont, Eric Dehareng, Frédéric Bertozzi, Carlo Crowe, Mark A. Dufrasne, Isabelle Soyeurt, Hélène Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms |
title | Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms |
title_full | Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms |
title_fullStr | Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms |
title_full_unstemmed | Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms |
title_short | Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms |
title_sort | validation of dairy cow bodyweight prediction using traits easily recorded by dairy herd improvement organizations and its potential improvement using feature selection algorithms |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8145206/ https://www.ncbi.nlm.nih.gov/pubmed/33946238 http://dx.doi.org/10.3390/ani11051288 |
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