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Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms

SIMPLE SUMMARY: First, the current work consisted of validating the feasibility of large-scale dairy cow bodyweight prediction from models involving the day in milk, milk yield, parity, and milk mid-infrared spectrum. Second, it aimed to improve the accuracy of predictive models by using feature sel...

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Autores principales: Tedde, Anthony, Grelet, Clément, Ho, Phuong N., Pryce, Jennie E., Hailemariam, Dagnachew, Wang, Zhiquan, Plastow, Graham, Gengler, Nicolas, Brostaux, Yves, Froidmont, Eric, Dehareng, Frédéric, Bertozzi, Carlo, Crowe, Mark A., Dufrasne, Isabelle, Soyeurt, Hélène
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8145206/
https://www.ncbi.nlm.nih.gov/pubmed/33946238
http://dx.doi.org/10.3390/ani11051288
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author Tedde, Anthony
Grelet, Clément
Ho, Phuong N.
Pryce, Jennie E.
Hailemariam, Dagnachew
Wang, Zhiquan
Plastow, Graham
Gengler, Nicolas
Brostaux, Yves
Froidmont, Eric
Dehareng, Frédéric
Bertozzi, Carlo
Crowe, Mark A.
Dufrasne, Isabelle
Soyeurt, Hélène
author_facet Tedde, Anthony
Grelet, Clément
Ho, Phuong N.
Pryce, Jennie E.
Hailemariam, Dagnachew
Wang, Zhiquan
Plastow, Graham
Gengler, Nicolas
Brostaux, Yves
Froidmont, Eric
Dehareng, Frédéric
Bertozzi, Carlo
Crowe, Mark A.
Dufrasne, Isabelle
Soyeurt, Hélène
author_sort Tedde, Anthony
collection PubMed
description SIMPLE SUMMARY: First, the current work consisted of validating the feasibility of large-scale dairy cow bodyweight prediction from models involving the day in milk, milk yield, parity, and milk mid-infrared spectrum. Second, it aimed to improve the accuracy of predictive models by using feature selection algorithms to decrease the number of predictors to limit overfitting. The models, using accessible and low-cost measurements, provided highly reproducible predictions. These could be easily obtained on an individual basis throughout a cow’s productive life by dairy herd improvement organizations, thus providing potentially relevant information for the dairy farmer at three levels: economics (reproductive performance), animal welfare (disease detection), and environment (methane production). ABSTRACT: Knowing the body weight (BW) of a cow at a specific moment or measuring its changes through time is of interest for management purposes. The current work aimed to validate the feasibility of predicting BW using the day in milk, parity, milk yield, and milk mid-infrared (MIR) spectrum from a multiple-country dataset and reduce the number of predictors to limit the risk of over-fitting and potentially improve its accuracy. The BW modeling procedure involved feature selections and herd-independent validation in identifying the most interesting subsets of predictors and then external validation of the models. From 1849 records collected in 9 herds from 360 Holstein cows, the best performing models achieved a root mean square error (RMSE) for the herd-independent validation between 52 ± 2.34 kg to 56 ± 3.16 kg, including from 5 to 62 predictors. Among these models, three performed remarkably well in external validation using an independent dataset (N = 4067), resulting in RMSE ranging from 52 to 56 kg. The results suggest that multiple optimal BW predictive models coexist due to the high correlations between adjacent spectral points.
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spelling pubmed-81452062021-05-26 Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms Tedde, Anthony Grelet, Clément Ho, Phuong N. Pryce, Jennie E. Hailemariam, Dagnachew Wang, Zhiquan Plastow, Graham Gengler, Nicolas Brostaux, Yves Froidmont, Eric Dehareng, Frédéric Bertozzi, Carlo Crowe, Mark A. Dufrasne, Isabelle Soyeurt, Hélène Animals (Basel) Article SIMPLE SUMMARY: First, the current work consisted of validating the feasibility of large-scale dairy cow bodyweight prediction from models involving the day in milk, milk yield, parity, and milk mid-infrared spectrum. Second, it aimed to improve the accuracy of predictive models by using feature selection algorithms to decrease the number of predictors to limit overfitting. The models, using accessible and low-cost measurements, provided highly reproducible predictions. These could be easily obtained on an individual basis throughout a cow’s productive life by dairy herd improvement organizations, thus providing potentially relevant information for the dairy farmer at three levels: economics (reproductive performance), animal welfare (disease detection), and environment (methane production). ABSTRACT: Knowing the body weight (BW) of a cow at a specific moment or measuring its changes through time is of interest for management purposes. The current work aimed to validate the feasibility of predicting BW using the day in milk, parity, milk yield, and milk mid-infrared (MIR) spectrum from a multiple-country dataset and reduce the number of predictors to limit the risk of over-fitting and potentially improve its accuracy. The BW modeling procedure involved feature selections and herd-independent validation in identifying the most interesting subsets of predictors and then external validation of the models. From 1849 records collected in 9 herds from 360 Holstein cows, the best performing models achieved a root mean square error (RMSE) for the herd-independent validation between 52 ± 2.34 kg to 56 ± 3.16 kg, including from 5 to 62 predictors. Among these models, three performed remarkably well in external validation using an independent dataset (N = 4067), resulting in RMSE ranging from 52 to 56 kg. The results suggest that multiple optimal BW predictive models coexist due to the high correlations between adjacent spectral points. MDPI 2021-04-30 /pmc/articles/PMC8145206/ /pubmed/33946238 http://dx.doi.org/10.3390/ani11051288 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Tedde, Anthony
Grelet, Clément
Ho, Phuong N.
Pryce, Jennie E.
Hailemariam, Dagnachew
Wang, Zhiquan
Plastow, Graham
Gengler, Nicolas
Brostaux, Yves
Froidmont, Eric
Dehareng, Frédéric
Bertozzi, Carlo
Crowe, Mark A.
Dufrasne, Isabelle
Soyeurt, Hélène
Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms
title Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms
title_full Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms
title_fullStr Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms
title_full_unstemmed Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms
title_short Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms
title_sort validation of dairy cow bodyweight prediction using traits easily recorded by dairy herd improvement organizations and its potential improvement using feature selection algorithms
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8145206/
https://www.ncbi.nlm.nih.gov/pubmed/33946238
http://dx.doi.org/10.3390/ani11051288
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