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Transcriptomic Analysis of Rice Plants Overexpressing PsGAPDH in Response to Salinity Stress

In plants, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a main enzyme in the glycolytic pathway. It plays an essential role in glycerolipid metabolism and response to various stresses. To examine the function of PsGAPDH (Pleurotus sajor-caju GAPDH) in response to abiotic stress, we generated...

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Autores principales: Lim, Hyemin, Hwang, Hyunju, Kim, Taelim, Kim, Soyoung, Chung, Hoyong, Lee, Daewoo, Kim, Soorin, Park, Soochul, Cho, Woosuk, Ji, Hyeonso, Lee, Gangseob
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8146104/
https://www.ncbi.nlm.nih.gov/pubmed/33923067
http://dx.doi.org/10.3390/genes12050641
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author Lim, Hyemin
Hwang, Hyunju
Kim, Taelim
Kim, Soyoung
Chung, Hoyong
Lee, Daewoo
Kim, Soorin
Park, Soochul
Cho, Woosuk
Ji, Hyeonso
Lee, Gangseob
author_facet Lim, Hyemin
Hwang, Hyunju
Kim, Taelim
Kim, Soyoung
Chung, Hoyong
Lee, Daewoo
Kim, Soorin
Park, Soochul
Cho, Woosuk
Ji, Hyeonso
Lee, Gangseob
author_sort Lim, Hyemin
collection PubMed
description In plants, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a main enzyme in the glycolytic pathway. It plays an essential role in glycerolipid metabolism and response to various stresses. To examine the function of PsGAPDH (Pleurotus sajor-caju GAPDH) in response to abiotic stress, we generated transgenic rice plants with single-copy/intergenic/homozygous overexpression PsGAPDH (PsGAPDH-OX) and investigated their responses to salinity stress. Seedling growth and germination rates of PsGAPDH-OX were significantly increased under salt stress conditions compared to those of the wild type. To elucidate the role of PsGAPDH-OX in salt stress tolerance of rice, an Illumina HiSeq 2000 platform was used to analyze transcriptome profiles of leaves under salt stress. Analysis results of sequencing data showed that 1124 transcripts were differentially expressed. Using the list of differentially expressed genes (DEGs), functional enrichment analyses of DEGs such as Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were performed. KEGG pathway enrichment analysis revealed that unigenes exhibiting differential expression were involved in starch and sucrose metabolism. Interestingly, trehalose-6-phosphate synthase (TPS) genes, of which expression was enhanced by abiotic stress, showed a significant difference in PsGAPDH-OX. Findings of this study suggest that PsGAPDH plays a role in the adaptation of rice plants to salt stress.
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spelling pubmed-81461042021-05-26 Transcriptomic Analysis of Rice Plants Overexpressing PsGAPDH in Response to Salinity Stress Lim, Hyemin Hwang, Hyunju Kim, Taelim Kim, Soyoung Chung, Hoyong Lee, Daewoo Kim, Soorin Park, Soochul Cho, Woosuk Ji, Hyeonso Lee, Gangseob Genes (Basel) Article In plants, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a main enzyme in the glycolytic pathway. It plays an essential role in glycerolipid metabolism and response to various stresses. To examine the function of PsGAPDH (Pleurotus sajor-caju GAPDH) in response to abiotic stress, we generated transgenic rice plants with single-copy/intergenic/homozygous overexpression PsGAPDH (PsGAPDH-OX) and investigated their responses to salinity stress. Seedling growth and germination rates of PsGAPDH-OX were significantly increased under salt stress conditions compared to those of the wild type. To elucidate the role of PsGAPDH-OX in salt stress tolerance of rice, an Illumina HiSeq 2000 platform was used to analyze transcriptome profiles of leaves under salt stress. Analysis results of sequencing data showed that 1124 transcripts were differentially expressed. Using the list of differentially expressed genes (DEGs), functional enrichment analyses of DEGs such as Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were performed. KEGG pathway enrichment analysis revealed that unigenes exhibiting differential expression were involved in starch and sucrose metabolism. Interestingly, trehalose-6-phosphate synthase (TPS) genes, of which expression was enhanced by abiotic stress, showed a significant difference in PsGAPDH-OX. Findings of this study suggest that PsGAPDH plays a role in the adaptation of rice plants to salt stress. MDPI 2021-04-25 /pmc/articles/PMC8146104/ /pubmed/33923067 http://dx.doi.org/10.3390/genes12050641 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lim, Hyemin
Hwang, Hyunju
Kim, Taelim
Kim, Soyoung
Chung, Hoyong
Lee, Daewoo
Kim, Soorin
Park, Soochul
Cho, Woosuk
Ji, Hyeonso
Lee, Gangseob
Transcriptomic Analysis of Rice Plants Overexpressing PsGAPDH in Response to Salinity Stress
title Transcriptomic Analysis of Rice Plants Overexpressing PsGAPDH in Response to Salinity Stress
title_full Transcriptomic Analysis of Rice Plants Overexpressing PsGAPDH in Response to Salinity Stress
title_fullStr Transcriptomic Analysis of Rice Plants Overexpressing PsGAPDH in Response to Salinity Stress
title_full_unstemmed Transcriptomic Analysis of Rice Plants Overexpressing PsGAPDH in Response to Salinity Stress
title_short Transcriptomic Analysis of Rice Plants Overexpressing PsGAPDH in Response to Salinity Stress
title_sort transcriptomic analysis of rice plants overexpressing psgapdh in response to salinity stress
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8146104/
https://www.ncbi.nlm.nih.gov/pubmed/33923067
http://dx.doi.org/10.3390/genes12050641
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