Cargando…

Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort

We conducted targeted next-generation sequencing (TGS) and/or whole exome sequencing (WES) to assess the genetic profiles of clinically suspected retinitis pigmentosa (RP) in the Korean population. A cohort of 279 unrelated Korean patients with clinically diagnosed RP and available family members un...

Descripción completa

Detalles Bibliográficos
Autores principales: Kim, Yoon-Jeon, Kim, You-Na, Yoon, Young-Hee, Seo, Eul-Ju, Seo, Go-Hun, Keum, Changwon, Lee, Beom-Hee, Lee, Joo-Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8146864/
https://www.ncbi.nlm.nih.gov/pubmed/33946315
http://dx.doi.org/10.3390/genes12050675
_version_ 1783697496047878144
author Kim, Yoon-Jeon
Kim, You-Na
Yoon, Young-Hee
Seo, Eul-Ju
Seo, Go-Hun
Keum, Changwon
Lee, Beom-Hee
Lee, Joo-Yong
author_facet Kim, Yoon-Jeon
Kim, You-Na
Yoon, Young-Hee
Seo, Eul-Ju
Seo, Go-Hun
Keum, Changwon
Lee, Beom-Hee
Lee, Joo-Yong
author_sort Kim, Yoon-Jeon
collection PubMed
description We conducted targeted next-generation sequencing (TGS) and/or whole exome sequencing (WES) to assess the genetic profiles of clinically suspected retinitis pigmentosa (RP) in the Korean population. A cohort of 279 unrelated Korean patients with clinically diagnosed RP and available family members underwent molecular analyses using TGS consisting of 88 RP-causing genes and/or WES with clinical variant interpretation. The combined genetic tests (TGS and/or WES) found a mutation in the 44 RP-causing genes and seven inherited retinal disease (IRD)-causing genes, and the total mutation detection rate was 57%. The mutation detection rate was higher in patients who experienced visual deterioration at a younger age (75.4%, age of symptom onset under 10 years) and who had a family history of RP (70.7%). The most common causative genes were EYS (8.2%), USH2A (6.8%), and PDE6B (4.7%), but mutations were dispersed among the 51 RP/IRD genes generally. Meanwhile, the PDE6B mutation was the most common in patients experiencing initial symptoms in their first decade, EYS in their second to third decades, and USH2A in their fifth decades and older. Of note, WES revealed some unexpected genotypes: ABCC6, CHM, CYP4V2, RS1, TGFBI, VPS13B, and WDR19, which were verified by ophthalmological re-phenotyping.
format Online
Article
Text
id pubmed-8146864
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-81468642021-05-26 Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort Kim, Yoon-Jeon Kim, You-Na Yoon, Young-Hee Seo, Eul-Ju Seo, Go-Hun Keum, Changwon Lee, Beom-Hee Lee, Joo-Yong Genes (Basel) Article We conducted targeted next-generation sequencing (TGS) and/or whole exome sequencing (WES) to assess the genetic profiles of clinically suspected retinitis pigmentosa (RP) in the Korean population. A cohort of 279 unrelated Korean patients with clinically diagnosed RP and available family members underwent molecular analyses using TGS consisting of 88 RP-causing genes and/or WES with clinical variant interpretation. The combined genetic tests (TGS and/or WES) found a mutation in the 44 RP-causing genes and seven inherited retinal disease (IRD)-causing genes, and the total mutation detection rate was 57%. The mutation detection rate was higher in patients who experienced visual deterioration at a younger age (75.4%, age of symptom onset under 10 years) and who had a family history of RP (70.7%). The most common causative genes were EYS (8.2%), USH2A (6.8%), and PDE6B (4.7%), but mutations were dispersed among the 51 RP/IRD genes generally. Meanwhile, the PDE6B mutation was the most common in patients experiencing initial symptoms in their first decade, EYS in their second to third decades, and USH2A in their fifth decades and older. Of note, WES revealed some unexpected genotypes: ABCC6, CHM, CYP4V2, RS1, TGFBI, VPS13B, and WDR19, which were verified by ophthalmological re-phenotyping. MDPI 2021-04-30 /pmc/articles/PMC8146864/ /pubmed/33946315 http://dx.doi.org/10.3390/genes12050675 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kim, Yoon-Jeon
Kim, You-Na
Yoon, Young-Hee
Seo, Eul-Ju
Seo, Go-Hun
Keum, Changwon
Lee, Beom-Hee
Lee, Joo-Yong
Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort
title Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort
title_full Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort
title_fullStr Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort
title_full_unstemmed Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort
title_short Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort
title_sort diverse genetic landscape of suspected retinitis pigmentosa in a large korean cohort
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8146864/
https://www.ncbi.nlm.nih.gov/pubmed/33946315
http://dx.doi.org/10.3390/genes12050675
work_keys_str_mv AT kimyoonjeon diversegeneticlandscapeofsuspectedretinitispigmentosainalargekoreancohort
AT kimyouna diversegeneticlandscapeofsuspectedretinitispigmentosainalargekoreancohort
AT yoonyounghee diversegeneticlandscapeofsuspectedretinitispigmentosainalargekoreancohort
AT seoeulju diversegeneticlandscapeofsuspectedretinitispigmentosainalargekoreancohort
AT seogohun diversegeneticlandscapeofsuspectedretinitispigmentosainalargekoreancohort
AT keumchangwon diversegeneticlandscapeofsuspectedretinitispigmentosainalargekoreancohort
AT leebeomhee diversegeneticlandscapeofsuspectedretinitispigmentosainalargekoreancohort
AT leejooyong diversegeneticlandscapeofsuspectedretinitispigmentosainalargekoreancohort