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Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort
We conducted targeted next-generation sequencing (TGS) and/or whole exome sequencing (WES) to assess the genetic profiles of clinically suspected retinitis pigmentosa (RP) in the Korean population. A cohort of 279 unrelated Korean patients with clinically diagnosed RP and available family members un...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8146864/ https://www.ncbi.nlm.nih.gov/pubmed/33946315 http://dx.doi.org/10.3390/genes12050675 |
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author | Kim, Yoon-Jeon Kim, You-Na Yoon, Young-Hee Seo, Eul-Ju Seo, Go-Hun Keum, Changwon Lee, Beom-Hee Lee, Joo-Yong |
author_facet | Kim, Yoon-Jeon Kim, You-Na Yoon, Young-Hee Seo, Eul-Ju Seo, Go-Hun Keum, Changwon Lee, Beom-Hee Lee, Joo-Yong |
author_sort | Kim, Yoon-Jeon |
collection | PubMed |
description | We conducted targeted next-generation sequencing (TGS) and/or whole exome sequencing (WES) to assess the genetic profiles of clinically suspected retinitis pigmentosa (RP) in the Korean population. A cohort of 279 unrelated Korean patients with clinically diagnosed RP and available family members underwent molecular analyses using TGS consisting of 88 RP-causing genes and/or WES with clinical variant interpretation. The combined genetic tests (TGS and/or WES) found a mutation in the 44 RP-causing genes and seven inherited retinal disease (IRD)-causing genes, and the total mutation detection rate was 57%. The mutation detection rate was higher in patients who experienced visual deterioration at a younger age (75.4%, age of symptom onset under 10 years) and who had a family history of RP (70.7%). The most common causative genes were EYS (8.2%), USH2A (6.8%), and PDE6B (4.7%), but mutations were dispersed among the 51 RP/IRD genes generally. Meanwhile, the PDE6B mutation was the most common in patients experiencing initial symptoms in their first decade, EYS in their second to third decades, and USH2A in their fifth decades and older. Of note, WES revealed some unexpected genotypes: ABCC6, CHM, CYP4V2, RS1, TGFBI, VPS13B, and WDR19, which were verified by ophthalmological re-phenotyping. |
format | Online Article Text |
id | pubmed-8146864 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81468642021-05-26 Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort Kim, Yoon-Jeon Kim, You-Na Yoon, Young-Hee Seo, Eul-Ju Seo, Go-Hun Keum, Changwon Lee, Beom-Hee Lee, Joo-Yong Genes (Basel) Article We conducted targeted next-generation sequencing (TGS) and/or whole exome sequencing (WES) to assess the genetic profiles of clinically suspected retinitis pigmentosa (RP) in the Korean population. A cohort of 279 unrelated Korean patients with clinically diagnosed RP and available family members underwent molecular analyses using TGS consisting of 88 RP-causing genes and/or WES with clinical variant interpretation. The combined genetic tests (TGS and/or WES) found a mutation in the 44 RP-causing genes and seven inherited retinal disease (IRD)-causing genes, and the total mutation detection rate was 57%. The mutation detection rate was higher in patients who experienced visual deterioration at a younger age (75.4%, age of symptom onset under 10 years) and who had a family history of RP (70.7%). The most common causative genes were EYS (8.2%), USH2A (6.8%), and PDE6B (4.7%), but mutations were dispersed among the 51 RP/IRD genes generally. Meanwhile, the PDE6B mutation was the most common in patients experiencing initial symptoms in their first decade, EYS in their second to third decades, and USH2A in their fifth decades and older. Of note, WES revealed some unexpected genotypes: ABCC6, CHM, CYP4V2, RS1, TGFBI, VPS13B, and WDR19, which were verified by ophthalmological re-phenotyping. MDPI 2021-04-30 /pmc/articles/PMC8146864/ /pubmed/33946315 http://dx.doi.org/10.3390/genes12050675 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kim, Yoon-Jeon Kim, You-Na Yoon, Young-Hee Seo, Eul-Ju Seo, Go-Hun Keum, Changwon Lee, Beom-Hee Lee, Joo-Yong Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort |
title | Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort |
title_full | Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort |
title_fullStr | Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort |
title_full_unstemmed | Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort |
title_short | Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort |
title_sort | diverse genetic landscape of suspected retinitis pigmentosa in a large korean cohort |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8146864/ https://www.ncbi.nlm.nih.gov/pubmed/33946315 http://dx.doi.org/10.3390/genes12050675 |
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