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Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach

The SARS-CoV-2 outbreak was declared a worldwide pandemic in 2020. Infection triggers the respiratory tract disease COVID-19, which is accompanied by serious changes in clinical biomarkers such as hemoglobin and interleukins. The same parameters are altered during hemolysis, which is characterized b...

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Autores principales: Hopp, Marie-Thérèse, Domingo-Fernández, Daniel, Gadiya, Yojana, Detzel, Milena S., Graf, Regina, Schmalohr, Benjamin F., Kodamullil, Alpha T., Imhof, Diana, Hofmann-Apitius, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147026/
https://www.ncbi.nlm.nih.gov/pubmed/33925394
http://dx.doi.org/10.3390/biom11050644
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author Hopp, Marie-Thérèse
Domingo-Fernández, Daniel
Gadiya, Yojana
Detzel, Milena S.
Graf, Regina
Schmalohr, Benjamin F.
Kodamullil, Alpha T.
Imhof, Diana
Hofmann-Apitius, Martin
author_facet Hopp, Marie-Thérèse
Domingo-Fernández, Daniel
Gadiya, Yojana
Detzel, Milena S.
Graf, Regina
Schmalohr, Benjamin F.
Kodamullil, Alpha T.
Imhof, Diana
Hofmann-Apitius, Martin
author_sort Hopp, Marie-Thérèse
collection PubMed
description The SARS-CoV-2 outbreak was declared a worldwide pandemic in 2020. Infection triggers the respiratory tract disease COVID-19, which is accompanied by serious changes in clinical biomarkers such as hemoglobin and interleukins. The same parameters are altered during hemolysis, which is characterized by an increase in labile heme. We present two computational–experimental approaches aimed at analyzing a potential link between heme-related and COVID-19 pathophysiologies. Herein, we performed a detailed analysis of the common pathways induced by heme and SARS-CoV-2 by superimposition of knowledge graphs covering heme biology and COVID-19 pathophysiology. Focus was laid on inflammatory pathways and distinct biomarkers as the linking elements. In a second approach, four COVID-19-related proteins, the host cell proteins ACE2 and TMPRSS2 as well as the viral proteins 7a and S protein were computationally analyzed as potential heme-binding proteins with an experimental validation. The results contribute to the understanding of the progression of COVID-19 infections in patients with different clinical backgrounds and may allow for a more individual diagnosis and therapy in the future.
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spelling pubmed-81470262021-05-26 Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach Hopp, Marie-Thérèse Domingo-Fernández, Daniel Gadiya, Yojana Detzel, Milena S. Graf, Regina Schmalohr, Benjamin F. Kodamullil, Alpha T. Imhof, Diana Hofmann-Apitius, Martin Biomolecules Article The SARS-CoV-2 outbreak was declared a worldwide pandemic in 2020. Infection triggers the respiratory tract disease COVID-19, which is accompanied by serious changes in clinical biomarkers such as hemoglobin and interleukins. The same parameters are altered during hemolysis, which is characterized by an increase in labile heme. We present two computational–experimental approaches aimed at analyzing a potential link between heme-related and COVID-19 pathophysiologies. Herein, we performed a detailed analysis of the common pathways induced by heme and SARS-CoV-2 by superimposition of knowledge graphs covering heme biology and COVID-19 pathophysiology. Focus was laid on inflammatory pathways and distinct biomarkers as the linking elements. In a second approach, four COVID-19-related proteins, the host cell proteins ACE2 and TMPRSS2 as well as the viral proteins 7a and S protein were computationally analyzed as potential heme-binding proteins with an experimental validation. The results contribute to the understanding of the progression of COVID-19 infections in patients with different clinical backgrounds and may allow for a more individual diagnosis and therapy in the future. MDPI 2021-04-27 /pmc/articles/PMC8147026/ /pubmed/33925394 http://dx.doi.org/10.3390/biom11050644 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Hopp, Marie-Thérèse
Domingo-Fernández, Daniel
Gadiya, Yojana
Detzel, Milena S.
Graf, Regina
Schmalohr, Benjamin F.
Kodamullil, Alpha T.
Imhof, Diana
Hofmann-Apitius, Martin
Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach
title Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach
title_full Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach
title_fullStr Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach
title_full_unstemmed Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach
title_short Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach
title_sort linking covid-19 and heme-driven pathophysiologies: a combined computational–experimental approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147026/
https://www.ncbi.nlm.nih.gov/pubmed/33925394
http://dx.doi.org/10.3390/biom11050644
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