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Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach
The SARS-CoV-2 outbreak was declared a worldwide pandemic in 2020. Infection triggers the respiratory tract disease COVID-19, which is accompanied by serious changes in clinical biomarkers such as hemoglobin and interleukins. The same parameters are altered during hemolysis, which is characterized b...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147026/ https://www.ncbi.nlm.nih.gov/pubmed/33925394 http://dx.doi.org/10.3390/biom11050644 |
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author | Hopp, Marie-Thérèse Domingo-Fernández, Daniel Gadiya, Yojana Detzel, Milena S. Graf, Regina Schmalohr, Benjamin F. Kodamullil, Alpha T. Imhof, Diana Hofmann-Apitius, Martin |
author_facet | Hopp, Marie-Thérèse Domingo-Fernández, Daniel Gadiya, Yojana Detzel, Milena S. Graf, Regina Schmalohr, Benjamin F. Kodamullil, Alpha T. Imhof, Diana Hofmann-Apitius, Martin |
author_sort | Hopp, Marie-Thérèse |
collection | PubMed |
description | The SARS-CoV-2 outbreak was declared a worldwide pandemic in 2020. Infection triggers the respiratory tract disease COVID-19, which is accompanied by serious changes in clinical biomarkers such as hemoglobin and interleukins. The same parameters are altered during hemolysis, which is characterized by an increase in labile heme. We present two computational–experimental approaches aimed at analyzing a potential link between heme-related and COVID-19 pathophysiologies. Herein, we performed a detailed analysis of the common pathways induced by heme and SARS-CoV-2 by superimposition of knowledge graphs covering heme biology and COVID-19 pathophysiology. Focus was laid on inflammatory pathways and distinct biomarkers as the linking elements. In a second approach, four COVID-19-related proteins, the host cell proteins ACE2 and TMPRSS2 as well as the viral proteins 7a and S protein were computationally analyzed as potential heme-binding proteins with an experimental validation. The results contribute to the understanding of the progression of COVID-19 infections in patients with different clinical backgrounds and may allow for a more individual diagnosis and therapy in the future. |
format | Online Article Text |
id | pubmed-8147026 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81470262021-05-26 Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach Hopp, Marie-Thérèse Domingo-Fernández, Daniel Gadiya, Yojana Detzel, Milena S. Graf, Regina Schmalohr, Benjamin F. Kodamullil, Alpha T. Imhof, Diana Hofmann-Apitius, Martin Biomolecules Article The SARS-CoV-2 outbreak was declared a worldwide pandemic in 2020. Infection triggers the respiratory tract disease COVID-19, which is accompanied by serious changes in clinical biomarkers such as hemoglobin and interleukins. The same parameters are altered during hemolysis, which is characterized by an increase in labile heme. We present two computational–experimental approaches aimed at analyzing a potential link between heme-related and COVID-19 pathophysiologies. Herein, we performed a detailed analysis of the common pathways induced by heme and SARS-CoV-2 by superimposition of knowledge graphs covering heme biology and COVID-19 pathophysiology. Focus was laid on inflammatory pathways and distinct biomarkers as the linking elements. In a second approach, four COVID-19-related proteins, the host cell proteins ACE2 and TMPRSS2 as well as the viral proteins 7a and S protein were computationally analyzed as potential heme-binding proteins with an experimental validation. The results contribute to the understanding of the progression of COVID-19 infections in patients with different clinical backgrounds and may allow for a more individual diagnosis and therapy in the future. MDPI 2021-04-27 /pmc/articles/PMC8147026/ /pubmed/33925394 http://dx.doi.org/10.3390/biom11050644 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Hopp, Marie-Thérèse Domingo-Fernández, Daniel Gadiya, Yojana Detzel, Milena S. Graf, Regina Schmalohr, Benjamin F. Kodamullil, Alpha T. Imhof, Diana Hofmann-Apitius, Martin Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach |
title | Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach |
title_full | Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach |
title_fullStr | Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach |
title_full_unstemmed | Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach |
title_short | Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach |
title_sort | linking covid-19 and heme-driven pathophysiologies: a combined computational–experimental approach |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147026/ https://www.ncbi.nlm.nih.gov/pubmed/33925394 http://dx.doi.org/10.3390/biom11050644 |
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