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Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
Nowadays, cervical cancer (CC) is treated as the leading cancer among women throughout the world. Despite effective vaccination and improved surgery and treatment, CC retains its fatality rate of about half of the infected population globally. The major screening biomarkers and therapeutic target id...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147030/ https://www.ncbi.nlm.nih.gov/pubmed/33946372 http://dx.doi.org/10.3390/jpm11050363 |
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author | Oany, Arafat Rahman Mia, Mamun Pervin, Tahmina Alyami, Salem Ali Moni, Mohammad Ali |
author_facet | Oany, Arafat Rahman Mia, Mamun Pervin, Tahmina Alyami, Salem Ali Moni, Mohammad Ali |
author_sort | Oany, Arafat Rahman |
collection | PubMed |
description | Nowadays, cervical cancer (CC) is treated as the leading cancer among women throughout the world. Despite effective vaccination and improved surgery and treatment, CC retains its fatality rate of about half of the infected population globally. The major screening biomarkers and therapeutic target identification have now become a global concern. In the present study, we have employed systems biology approaches to retrieve the potential biomarkers and pathways from transcriptomic profiling. Initially, we have identified 76 of each up-regulated and down-regulated gene from a total of 4643 differentially expressed genes. The up-regulatory genes mainly concentrate on immune-inflammatory responses, and the down-regulatory genes are on receptor binding and gamma-glutamyltransferase. The involved pathways associated with these genes were also assessed through pathway enrichment, and we mainly focused on different cancer pathways, immunoresponse, and cell cycle pathways. After the subsequent enrichment of these genes, we have identified 12 hub genes, which play a crucial role in CC and are verified by expression profile analysis. From our study, we have found that genes LILRB2 and CYBB play crucial roles in CC, as reported here for the first time. Furthermore, the survivability of the hub genes was also assessed, and among them, finally, CXCR4 has been identified as one of the most potential differentially expressed genes that might play a vital role in the survival of CC patients. Thus, CXCR4 could be used as a prognostic and/or diagnostic biomarker and a drug target for CC. |
format | Online Article Text |
id | pubmed-8147030 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81470302021-05-26 Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer Oany, Arafat Rahman Mia, Mamun Pervin, Tahmina Alyami, Salem Ali Moni, Mohammad Ali J Pers Med Article Nowadays, cervical cancer (CC) is treated as the leading cancer among women throughout the world. Despite effective vaccination and improved surgery and treatment, CC retains its fatality rate of about half of the infected population globally. The major screening biomarkers and therapeutic target identification have now become a global concern. In the present study, we have employed systems biology approaches to retrieve the potential biomarkers and pathways from transcriptomic profiling. Initially, we have identified 76 of each up-regulated and down-regulated gene from a total of 4643 differentially expressed genes. The up-regulatory genes mainly concentrate on immune-inflammatory responses, and the down-regulatory genes are on receptor binding and gamma-glutamyltransferase. The involved pathways associated with these genes were also assessed through pathway enrichment, and we mainly focused on different cancer pathways, immunoresponse, and cell cycle pathways. After the subsequent enrichment of these genes, we have identified 12 hub genes, which play a crucial role in CC and are verified by expression profile analysis. From our study, we have found that genes LILRB2 and CYBB play crucial roles in CC, as reported here for the first time. Furthermore, the survivability of the hub genes was also assessed, and among them, finally, CXCR4 has been identified as one of the most potential differentially expressed genes that might play a vital role in the survival of CC patients. Thus, CXCR4 could be used as a prognostic and/or diagnostic biomarker and a drug target for CC. MDPI 2021-04-30 /pmc/articles/PMC8147030/ /pubmed/33946372 http://dx.doi.org/10.3390/jpm11050363 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Oany, Arafat Rahman Mia, Mamun Pervin, Tahmina Alyami, Salem Ali Moni, Mohammad Ali Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer |
title | Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer |
title_full | Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer |
title_fullStr | Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer |
title_full_unstemmed | Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer |
title_short | Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer |
title_sort | integrative systems biology approaches to identify potential biomarkers and pathways of cervical cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147030/ https://www.ncbi.nlm.nih.gov/pubmed/33946372 http://dx.doi.org/10.3390/jpm11050363 |
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