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Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer

Nowadays, cervical cancer (CC) is treated as the leading cancer among women throughout the world. Despite effective vaccination and improved surgery and treatment, CC retains its fatality rate of about half of the infected population globally. The major screening biomarkers and therapeutic target id...

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Autores principales: Oany, Arafat Rahman, Mia, Mamun, Pervin, Tahmina, Alyami, Salem Ali, Moni, Mohammad Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147030/
https://www.ncbi.nlm.nih.gov/pubmed/33946372
http://dx.doi.org/10.3390/jpm11050363
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author Oany, Arafat Rahman
Mia, Mamun
Pervin, Tahmina
Alyami, Salem Ali
Moni, Mohammad Ali
author_facet Oany, Arafat Rahman
Mia, Mamun
Pervin, Tahmina
Alyami, Salem Ali
Moni, Mohammad Ali
author_sort Oany, Arafat Rahman
collection PubMed
description Nowadays, cervical cancer (CC) is treated as the leading cancer among women throughout the world. Despite effective vaccination and improved surgery and treatment, CC retains its fatality rate of about half of the infected population globally. The major screening biomarkers and therapeutic target identification have now become a global concern. In the present study, we have employed systems biology approaches to retrieve the potential biomarkers and pathways from transcriptomic profiling. Initially, we have identified 76 of each up-regulated and down-regulated gene from a total of 4643 differentially expressed genes. The up-regulatory genes mainly concentrate on immune-inflammatory responses, and the down-regulatory genes are on receptor binding and gamma-glutamyltransferase. The involved pathways associated with these genes were also assessed through pathway enrichment, and we mainly focused on different cancer pathways, immunoresponse, and cell cycle pathways. After the subsequent enrichment of these genes, we have identified 12 hub genes, which play a crucial role in CC and are verified by expression profile analysis. From our study, we have found that genes LILRB2 and CYBB play crucial roles in CC, as reported here for the first time. Furthermore, the survivability of the hub genes was also assessed, and among them, finally, CXCR4 has been identified as one of the most potential differentially expressed genes that might play a vital role in the survival of CC patients. Thus, CXCR4 could be used as a prognostic and/or diagnostic biomarker and a drug target for CC.
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spelling pubmed-81470302021-05-26 Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer Oany, Arafat Rahman Mia, Mamun Pervin, Tahmina Alyami, Salem Ali Moni, Mohammad Ali J Pers Med Article Nowadays, cervical cancer (CC) is treated as the leading cancer among women throughout the world. Despite effective vaccination and improved surgery and treatment, CC retains its fatality rate of about half of the infected population globally. The major screening biomarkers and therapeutic target identification have now become a global concern. In the present study, we have employed systems biology approaches to retrieve the potential biomarkers and pathways from transcriptomic profiling. Initially, we have identified 76 of each up-regulated and down-regulated gene from a total of 4643 differentially expressed genes. The up-regulatory genes mainly concentrate on immune-inflammatory responses, and the down-regulatory genes are on receptor binding and gamma-glutamyltransferase. The involved pathways associated with these genes were also assessed through pathway enrichment, and we mainly focused on different cancer pathways, immunoresponse, and cell cycle pathways. After the subsequent enrichment of these genes, we have identified 12 hub genes, which play a crucial role in CC and are verified by expression profile analysis. From our study, we have found that genes LILRB2 and CYBB play crucial roles in CC, as reported here for the first time. Furthermore, the survivability of the hub genes was also assessed, and among them, finally, CXCR4 has been identified as one of the most potential differentially expressed genes that might play a vital role in the survival of CC patients. Thus, CXCR4 could be used as a prognostic and/or diagnostic biomarker and a drug target for CC. MDPI 2021-04-30 /pmc/articles/PMC8147030/ /pubmed/33946372 http://dx.doi.org/10.3390/jpm11050363 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Oany, Arafat Rahman
Mia, Mamun
Pervin, Tahmina
Alyami, Salem Ali
Moni, Mohammad Ali
Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
title Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
title_full Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
title_fullStr Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
title_full_unstemmed Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
title_short Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
title_sort integrative systems biology approaches to identify potential biomarkers and pathways of cervical cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147030/
https://www.ncbi.nlm.nih.gov/pubmed/33946372
http://dx.doi.org/10.3390/jpm11050363
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