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Enhanced Field-Based Detection of Potato Blight in Complex Backgrounds Using Deep Learning

Rapid and automated identification of blight disease in potato will help farmers to apply timely remedies to protect their produce. Manual detection of blight disease can be cumbersome and may require trained experts. To overcome these issues, we present an automated system using the Mask Region-bas...

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Autores principales: Johnson, Joe, Sharma, Geetanjali, Srinivasan, Srikant, Masakapalli, Shyam Kumar, Sharma, Sanjeev, Sharma, Jagdev, Dua, Vijay Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AAAS 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147694/
https://www.ncbi.nlm.nih.gov/pubmed/34104897
http://dx.doi.org/10.34133/2021/9835724
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author Johnson, Joe
Sharma, Geetanjali
Srinivasan, Srikant
Masakapalli, Shyam Kumar
Sharma, Sanjeev
Sharma, Jagdev
Dua, Vijay Kumar
author_facet Johnson, Joe
Sharma, Geetanjali
Srinivasan, Srikant
Masakapalli, Shyam Kumar
Sharma, Sanjeev
Sharma, Jagdev
Dua, Vijay Kumar
author_sort Johnson, Joe
collection PubMed
description Rapid and automated identification of blight disease in potato will help farmers to apply timely remedies to protect their produce. Manual detection of blight disease can be cumbersome and may require trained experts. To overcome these issues, we present an automated system using the Mask Region-based convolutional neural network (Mask R-CNN) architecture, with residual network as the backbone network for detecting blight disease patches on potato leaves in field conditions. The approach uses transfer learning, which can generate good results even with small datasets. The model was trained on a dataset of 1423 images of potato leaves obtained from fields in different geographical locations and at different times of the day. The images were manually annotated to create over 6200 labeled patches covering diseased and healthy portions of the leaf. The Mask R-CNN model was able to correctly differentiate between the diseased patch on the potato leaf and the similar-looking background soil patches, which can confound the outcome of binary classification. To improve the detection performance, the original RGB dataset was then converted to HSL, HSV, LAB, XYZ, and YCrCb color spaces. A separate model was created for each color space and tested on 417 field-based test images. This yielded 81.4% mean average precision on the LAB model and 56.9% mean average recall on the HSL model, slightly outperforming the original RGB color space model. Manual analysis of the detection performance indicates an overall precision of 98% on leaf images in a field environment containing complex backgrounds.
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spelling pubmed-81476942021-06-07 Enhanced Field-Based Detection of Potato Blight in Complex Backgrounds Using Deep Learning Johnson, Joe Sharma, Geetanjali Srinivasan, Srikant Masakapalli, Shyam Kumar Sharma, Sanjeev Sharma, Jagdev Dua, Vijay Kumar Plant Phenomics Research Article Rapid and automated identification of blight disease in potato will help farmers to apply timely remedies to protect their produce. Manual detection of blight disease can be cumbersome and may require trained experts. To overcome these issues, we present an automated system using the Mask Region-based convolutional neural network (Mask R-CNN) architecture, with residual network as the backbone network for detecting blight disease patches on potato leaves in field conditions. The approach uses transfer learning, which can generate good results even with small datasets. The model was trained on a dataset of 1423 images of potato leaves obtained from fields in different geographical locations and at different times of the day. The images were manually annotated to create over 6200 labeled patches covering diseased and healthy portions of the leaf. The Mask R-CNN model was able to correctly differentiate between the diseased patch on the potato leaf and the similar-looking background soil patches, which can confound the outcome of binary classification. To improve the detection performance, the original RGB dataset was then converted to HSL, HSV, LAB, XYZ, and YCrCb color spaces. A separate model was created for each color space and tested on 417 field-based test images. This yielded 81.4% mean average precision on the LAB model and 56.9% mean average recall on the HSL model, slightly outperforming the original RGB color space model. Manual analysis of the detection performance indicates an overall precision of 98% on leaf images in a field environment containing complex backgrounds. AAAS 2021-05-16 /pmc/articles/PMC8147694/ /pubmed/34104897 http://dx.doi.org/10.34133/2021/9835724 Text en Copyright © 2021 Joe Johnson et al. https://creativecommons.org/licenses/by/4.0/Exclusive Licensee Nanjing Agricultural University. Distributed under a Creative Commons Attribution License (CC BY 4.0).
spellingShingle Research Article
Johnson, Joe
Sharma, Geetanjali
Srinivasan, Srikant
Masakapalli, Shyam Kumar
Sharma, Sanjeev
Sharma, Jagdev
Dua, Vijay Kumar
Enhanced Field-Based Detection of Potato Blight in Complex Backgrounds Using Deep Learning
title Enhanced Field-Based Detection of Potato Blight in Complex Backgrounds Using Deep Learning
title_full Enhanced Field-Based Detection of Potato Blight in Complex Backgrounds Using Deep Learning
title_fullStr Enhanced Field-Based Detection of Potato Blight in Complex Backgrounds Using Deep Learning
title_full_unstemmed Enhanced Field-Based Detection of Potato Blight in Complex Backgrounds Using Deep Learning
title_short Enhanced Field-Based Detection of Potato Blight in Complex Backgrounds Using Deep Learning
title_sort enhanced field-based detection of potato blight in complex backgrounds using deep learning
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147694/
https://www.ncbi.nlm.nih.gov/pubmed/34104897
http://dx.doi.org/10.34133/2021/9835724
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