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The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets
The method of regularized stokeslets is widely used in microscale biological fluid dynamics due to its ease of implementation, natural treatment of complex moving geometries, and removal of singular functions to integrate. The standard implementation of the method is subject to high computational co...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8150023/ https://www.ncbi.nlm.nih.gov/pubmed/34084547 http://dx.doi.org/10.1098/rsos.210108 |
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author | Gallagher, M. T. Smith, D. J. |
author_facet | Gallagher, M. T. Smith, D. J. |
author_sort | Gallagher, M. T. |
collection | PubMed |
description | The method of regularized stokeslets is widely used in microscale biological fluid dynamics due to its ease of implementation, natural treatment of complex moving geometries, and removal of singular functions to integrate. The standard implementation of the method is subject to high computational cost due to the coupling of the linear system size to the numerical resolution required to resolve the rapidly varying regularized stokeslet kernel. Here, we show how Richardson extrapolation with coarse values of the regularization parameter is ideally suited to reduce the quadrature error, hence dramatically reducing the storage and solution costs without loss of accuracy. Numerical experiments on the resistance and mobility problems in Stokes flow support the analysis, confirming several orders of magnitude improvement in accuracy and/or efficiency. |
format | Online Article Text |
id | pubmed-8150023 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-81500232021-06-02 The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets Gallagher, M. T. Smith, D. J. R Soc Open Sci Mathematics The method of regularized stokeslets is widely used in microscale biological fluid dynamics due to its ease of implementation, natural treatment of complex moving geometries, and removal of singular functions to integrate. The standard implementation of the method is subject to high computational cost due to the coupling of the linear system size to the numerical resolution required to resolve the rapidly varying regularized stokeslet kernel. Here, we show how Richardson extrapolation with coarse values of the regularization parameter is ideally suited to reduce the quadrature error, hence dramatically reducing the storage and solution costs without loss of accuracy. Numerical experiments on the resistance and mobility problems in Stokes flow support the analysis, confirming several orders of magnitude improvement in accuracy and/or efficiency. The Royal Society 2021-05-26 /pmc/articles/PMC8150023/ /pubmed/34084547 http://dx.doi.org/10.1098/rsos.210108 Text en © 2021 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Mathematics Gallagher, M. T. Smith, D. J. The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets |
title | The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets |
title_full | The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets |
title_fullStr | The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets |
title_full_unstemmed | The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets |
title_short | The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets |
title_sort | art of coarse stokes: richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets |
topic | Mathematics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8150023/ https://www.ncbi.nlm.nih.gov/pubmed/34084547 http://dx.doi.org/10.1098/rsos.210108 |
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