Cargando…
Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation
In this paper, we propose a multi-scale feature extraction with novel attention-based convolutional learning using the U-SegNet architecture to achieve segmentation of brain tissue from a magnetic resonance image (MRI). Although convolutional neural networks (CNNs) show enormous growth in medical im...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8151599/ https://www.ncbi.nlm.nih.gov/pubmed/34066042 http://dx.doi.org/10.3390/s21103363 |
_version_ | 1783698421451849728 |
---|---|
author | Dayananda, Chaitra Choi, Jae-Young Lee, Bumshik |
author_facet | Dayananda, Chaitra Choi, Jae-Young Lee, Bumshik |
author_sort | Dayananda, Chaitra |
collection | PubMed |
description | In this paper, we propose a multi-scale feature extraction with novel attention-based convolutional learning using the U-SegNet architecture to achieve segmentation of brain tissue from a magnetic resonance image (MRI). Although convolutional neural networks (CNNs) show enormous growth in medical image segmentation, there are some drawbacks with the conventional CNN models. In particular, the conventional use of encoder-decoder approaches leads to the extraction of similar low-level features multiple times, causing redundant use of information. Moreover, due to inefficient modeling of long-range dependencies, each semantic class is likely to be associated with non-accurate discriminative feature representations, resulting in low accuracy of segmentation. The proposed global attention module refines the feature extraction and improves the representational power of the convolutional neural network. Moreover, the attention-based multi-scale fusion strategy can integrate local features with their corresponding global dependencies. The integration of fire modules in both the encoder and decoder paths can significantly reduce the computational complexity owing to fewer model parameters. The proposed method was evaluated on publicly accessible datasets for brain tissue segmentation. The experimental results show that our proposed model achieves segmentation accuracies of 94.81% for cerebrospinal fluid (CSF), 95.54% for gray matter (GM), and 96.33% for white matter (WM) with a noticeably reduced number of learnable parameters. Our study shows better segmentation performance, improving the prediction accuracy by 2.5% in terms of dice similarity index while achieving a 4.5 times reduction in the number of learnable parameters compared to previously developed U-SegNet based segmentation approaches. This demonstrates that the proposed approach can achieve reliable and precise automatic segmentation of brain MRI images. |
format | Online Article Text |
id | pubmed-8151599 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81515992021-05-27 Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation Dayananda, Chaitra Choi, Jae-Young Lee, Bumshik Sensors (Basel) Article In this paper, we propose a multi-scale feature extraction with novel attention-based convolutional learning using the U-SegNet architecture to achieve segmentation of brain tissue from a magnetic resonance image (MRI). Although convolutional neural networks (CNNs) show enormous growth in medical image segmentation, there are some drawbacks with the conventional CNN models. In particular, the conventional use of encoder-decoder approaches leads to the extraction of similar low-level features multiple times, causing redundant use of information. Moreover, due to inefficient modeling of long-range dependencies, each semantic class is likely to be associated with non-accurate discriminative feature representations, resulting in low accuracy of segmentation. The proposed global attention module refines the feature extraction and improves the representational power of the convolutional neural network. Moreover, the attention-based multi-scale fusion strategy can integrate local features with their corresponding global dependencies. The integration of fire modules in both the encoder and decoder paths can significantly reduce the computational complexity owing to fewer model parameters. The proposed method was evaluated on publicly accessible datasets for brain tissue segmentation. The experimental results show that our proposed model achieves segmentation accuracies of 94.81% for cerebrospinal fluid (CSF), 95.54% for gray matter (GM), and 96.33% for white matter (WM) with a noticeably reduced number of learnable parameters. Our study shows better segmentation performance, improving the prediction accuracy by 2.5% in terms of dice similarity index while achieving a 4.5 times reduction in the number of learnable parameters compared to previously developed U-SegNet based segmentation approaches. This demonstrates that the proposed approach can achieve reliable and precise automatic segmentation of brain MRI images. MDPI 2021-05-12 /pmc/articles/PMC8151599/ /pubmed/34066042 http://dx.doi.org/10.3390/s21103363 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Dayananda, Chaitra Choi, Jae-Young Lee, Bumshik Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation |
title | Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation |
title_full | Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation |
title_fullStr | Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation |
title_full_unstemmed | Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation |
title_short | Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation |
title_sort | multi-scale squeeze u-segnet with multi global attention for brain mri segmentation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8151599/ https://www.ncbi.nlm.nih.gov/pubmed/34066042 http://dx.doi.org/10.3390/s21103363 |
work_keys_str_mv | AT dayanandachaitra multiscalesqueezeusegnetwithmultiglobalattentionforbrainmrisegmentation AT choijaeyoung multiscalesqueezeusegnetwithmultiglobalattentionforbrainmrisegmentation AT leebumshik multiscalesqueezeusegnetwithmultiglobalattentionforbrainmrisegmentation |