Cargando…

Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation

In this paper, we propose a multi-scale feature extraction with novel attention-based convolutional learning using the U-SegNet architecture to achieve segmentation of brain tissue from a magnetic resonance image (MRI). Although convolutional neural networks (CNNs) show enormous growth in medical im...

Descripción completa

Detalles Bibliográficos
Autores principales: Dayananda, Chaitra, Choi, Jae-Young, Lee, Bumshik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8151599/
https://www.ncbi.nlm.nih.gov/pubmed/34066042
http://dx.doi.org/10.3390/s21103363
_version_ 1783698421451849728
author Dayananda, Chaitra
Choi, Jae-Young
Lee, Bumshik
author_facet Dayananda, Chaitra
Choi, Jae-Young
Lee, Bumshik
author_sort Dayananda, Chaitra
collection PubMed
description In this paper, we propose a multi-scale feature extraction with novel attention-based convolutional learning using the U-SegNet architecture to achieve segmentation of brain tissue from a magnetic resonance image (MRI). Although convolutional neural networks (CNNs) show enormous growth in medical image segmentation, there are some drawbacks with the conventional CNN models. In particular, the conventional use of encoder-decoder approaches leads to the extraction of similar low-level features multiple times, causing redundant use of information. Moreover, due to inefficient modeling of long-range dependencies, each semantic class is likely to be associated with non-accurate discriminative feature representations, resulting in low accuracy of segmentation. The proposed global attention module refines the feature extraction and improves the representational power of the convolutional neural network. Moreover, the attention-based multi-scale fusion strategy can integrate local features with their corresponding global dependencies. The integration of fire modules in both the encoder and decoder paths can significantly reduce the computational complexity owing to fewer model parameters. The proposed method was evaluated on publicly accessible datasets for brain tissue segmentation. The experimental results show that our proposed model achieves segmentation accuracies of 94.81% for cerebrospinal fluid (CSF), 95.54% for gray matter (GM), and 96.33% for white matter (WM) with a noticeably reduced number of learnable parameters. Our study shows better segmentation performance, improving the prediction accuracy by 2.5% in terms of dice similarity index while achieving a 4.5 times reduction in the number of learnable parameters compared to previously developed U-SegNet based segmentation approaches. This demonstrates that the proposed approach can achieve reliable and precise automatic segmentation of brain MRI images.
format Online
Article
Text
id pubmed-8151599
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-81515992021-05-27 Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation Dayananda, Chaitra Choi, Jae-Young Lee, Bumshik Sensors (Basel) Article In this paper, we propose a multi-scale feature extraction with novel attention-based convolutional learning using the U-SegNet architecture to achieve segmentation of brain tissue from a magnetic resonance image (MRI). Although convolutional neural networks (CNNs) show enormous growth in medical image segmentation, there are some drawbacks with the conventional CNN models. In particular, the conventional use of encoder-decoder approaches leads to the extraction of similar low-level features multiple times, causing redundant use of information. Moreover, due to inefficient modeling of long-range dependencies, each semantic class is likely to be associated with non-accurate discriminative feature representations, resulting in low accuracy of segmentation. The proposed global attention module refines the feature extraction and improves the representational power of the convolutional neural network. Moreover, the attention-based multi-scale fusion strategy can integrate local features with their corresponding global dependencies. The integration of fire modules in both the encoder and decoder paths can significantly reduce the computational complexity owing to fewer model parameters. The proposed method was evaluated on publicly accessible datasets for brain tissue segmentation. The experimental results show that our proposed model achieves segmentation accuracies of 94.81% for cerebrospinal fluid (CSF), 95.54% for gray matter (GM), and 96.33% for white matter (WM) with a noticeably reduced number of learnable parameters. Our study shows better segmentation performance, improving the prediction accuracy by 2.5% in terms of dice similarity index while achieving a 4.5 times reduction in the number of learnable parameters compared to previously developed U-SegNet based segmentation approaches. This demonstrates that the proposed approach can achieve reliable and precise automatic segmentation of brain MRI images. MDPI 2021-05-12 /pmc/articles/PMC8151599/ /pubmed/34066042 http://dx.doi.org/10.3390/s21103363 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Dayananda, Chaitra
Choi, Jae-Young
Lee, Bumshik
Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation
title Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation
title_full Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation
title_fullStr Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation
title_full_unstemmed Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation
title_short Multi-Scale Squeeze U-SegNet with Multi Global Attention for Brain MRI Segmentation
title_sort multi-scale squeeze u-segnet with multi global attention for brain mri segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8151599/
https://www.ncbi.nlm.nih.gov/pubmed/34066042
http://dx.doi.org/10.3390/s21103363
work_keys_str_mv AT dayanandachaitra multiscalesqueezeusegnetwithmultiglobalattentionforbrainmrisegmentation
AT choijaeyoung multiscalesqueezeusegnetwithmultiglobalattentionforbrainmrisegmentation
AT leebumshik multiscalesqueezeusegnetwithmultiglobalattentionforbrainmrisegmentation