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Spectral deep learning for prediction and prospective validation of functional groups

State-of-the-art identification of the functional groups present in an unknown chemical entity requires the expertise of a skilled spectroscopist to analyse and interpret Fourier transform infra-red (FTIR), mass spectroscopy (MS) and/or nuclear magnetic resonance (NMR) data. This process can be time...

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Autores principales: Fine, Jonathan A., Rajasekar, Anand A., Jethava, Krupal P., Chopra, Gaurav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8152587/
https://www.ncbi.nlm.nih.gov/pubmed/34122917
http://dx.doi.org/10.1039/c9sc06240h
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author Fine, Jonathan A.
Rajasekar, Anand A.
Jethava, Krupal P.
Chopra, Gaurav
author_facet Fine, Jonathan A.
Rajasekar, Anand A.
Jethava, Krupal P.
Chopra, Gaurav
author_sort Fine, Jonathan A.
collection PubMed
description State-of-the-art identification of the functional groups present in an unknown chemical entity requires the expertise of a skilled spectroscopist to analyse and interpret Fourier transform infra-red (FTIR), mass spectroscopy (MS) and/or nuclear magnetic resonance (NMR) data. This process can be time-consuming and error-prone, especially for complex chemical entities that are poorly characterised in the literature, or inefficient to use with synthetic robots producing molecules at an accelerated rate. Herein, we introduce a fast, multi-label deep neural network for accurately identifying all the functional groups of unknown compounds using a combination of FTIR and MS spectra. We do not use any database, pre-established rules, procedures, or peak-matching methods. Our trained neural network reveals patterns typically used by human chemists to identify standard groups. Finally, we experimentally validated our neural network, trained on single compounds, to predict functional groups in compound mixtures. Our methodology showcases practical utility for future use in autonomous analytical detection.
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spelling pubmed-81525872021-06-11 Spectral deep learning for prediction and prospective validation of functional groups Fine, Jonathan A. Rajasekar, Anand A. Jethava, Krupal P. Chopra, Gaurav Chem Sci Chemistry State-of-the-art identification of the functional groups present in an unknown chemical entity requires the expertise of a skilled spectroscopist to analyse and interpret Fourier transform infra-red (FTIR), mass spectroscopy (MS) and/or nuclear magnetic resonance (NMR) data. This process can be time-consuming and error-prone, especially for complex chemical entities that are poorly characterised in the literature, or inefficient to use with synthetic robots producing molecules at an accelerated rate. Herein, we introduce a fast, multi-label deep neural network for accurately identifying all the functional groups of unknown compounds using a combination of FTIR and MS spectra. We do not use any database, pre-established rules, procedures, or peak-matching methods. Our trained neural network reveals patterns typically used by human chemists to identify standard groups. Finally, we experimentally validated our neural network, trained on single compounds, to predict functional groups in compound mixtures. Our methodology showcases practical utility for future use in autonomous analytical detection. The Royal Society of Chemistry 2020-03-13 /pmc/articles/PMC8152587/ /pubmed/34122917 http://dx.doi.org/10.1039/c9sc06240h Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/
spellingShingle Chemistry
Fine, Jonathan A.
Rajasekar, Anand A.
Jethava, Krupal P.
Chopra, Gaurav
Spectral deep learning for prediction and prospective validation of functional groups
title Spectral deep learning for prediction and prospective validation of functional groups
title_full Spectral deep learning for prediction and prospective validation of functional groups
title_fullStr Spectral deep learning for prediction and prospective validation of functional groups
title_full_unstemmed Spectral deep learning for prediction and prospective validation of functional groups
title_short Spectral deep learning for prediction and prospective validation of functional groups
title_sort spectral deep learning for prediction and prospective validation of functional groups
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8152587/
https://www.ncbi.nlm.nih.gov/pubmed/34122917
http://dx.doi.org/10.1039/c9sc06240h
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