Cargando…
Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy
Scientific names are not part of everyday language in any modern country, and their input as strings in a query system can be easily associated with typographical errors. While globally unique identifiers univocally address a taxon name, they can hardly be used for querying a database manually. Thus...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8153551/ https://www.ncbi.nlm.nih.gov/pubmed/34068389 http://dx.doi.org/10.3390/plants10050974 |
_version_ | 1783698823807238144 |
---|---|
author | Conti, Matteo Nimis, Pier Luigi Martellos, Stefano |
author_facet | Conti, Matteo Nimis, Pier Luigi Martellos, Stefano |
author_sort | Conti, Matteo |
collection | PubMed |
description | Scientific names are not part of everyday language in any modern country, and their input as strings in a query system can be easily associated with typographical errors. While globally unique identifiers univocally address a taxon name, they can hardly be used for querying a database manually. Thus, matching algorithms are often used to overcome misspelled names in query systems in several data repositories worldwide. In order to improve users’ experience in the use of FlorItaly, the Portal to the Flora of Italy, a near match algorithm to resolve misspelled scientific names has been integrated in the query systems. In addition, a novel tool in FlorItaly, capable of rapidly aligning any list of names to the nomenclatural backbone provided by the national checklists, has been developed. This manuscript aims at describing the potential of these new tools. |
format | Online Article Text |
id | pubmed-8153551 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81535512021-05-27 Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy Conti, Matteo Nimis, Pier Luigi Martellos, Stefano Plants (Basel) Article Scientific names are not part of everyday language in any modern country, and their input as strings in a query system can be easily associated with typographical errors. While globally unique identifiers univocally address a taxon name, they can hardly be used for querying a database manually. Thus, matching algorithms are often used to overcome misspelled names in query systems in several data repositories worldwide. In order to improve users’ experience in the use of FlorItaly, the Portal to the Flora of Italy, a near match algorithm to resolve misspelled scientific names has been integrated in the query systems. In addition, a novel tool in FlorItaly, capable of rapidly aligning any list of names to the nomenclatural backbone provided by the national checklists, has been developed. This manuscript aims at describing the potential of these new tools. MDPI 2021-05-13 /pmc/articles/PMC8153551/ /pubmed/34068389 http://dx.doi.org/10.3390/plants10050974 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Conti, Matteo Nimis, Pier Luigi Martellos, Stefano Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy |
title | Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy |
title_full | Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy |
title_fullStr | Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy |
title_full_unstemmed | Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy |
title_short | Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy |
title_sort | match algorithms for scientific names in floritaly, the portal to the flora of italy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8153551/ https://www.ncbi.nlm.nih.gov/pubmed/34068389 http://dx.doi.org/10.3390/plants10050974 |
work_keys_str_mv | AT contimatteo matchalgorithmsforscientificnamesinfloritalytheportaltothefloraofitaly AT nimispierluigi matchalgorithmsforscientificnamesinfloritalytheportaltothefloraofitaly AT martellosstefano matchalgorithmsforscientificnamesinfloritalytheportaltothefloraofitaly |