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Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy

Scientific names are not part of everyday language in any modern country, and their input as strings in a query system can be easily associated with typographical errors. While globally unique identifiers univocally address a taxon name, they can hardly be used for querying a database manually. Thus...

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Detalles Bibliográficos
Autores principales: Conti, Matteo, Nimis, Pier Luigi, Martellos, Stefano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8153551/
https://www.ncbi.nlm.nih.gov/pubmed/34068389
http://dx.doi.org/10.3390/plants10050974
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author Conti, Matteo
Nimis, Pier Luigi
Martellos, Stefano
author_facet Conti, Matteo
Nimis, Pier Luigi
Martellos, Stefano
author_sort Conti, Matteo
collection PubMed
description Scientific names are not part of everyday language in any modern country, and their input as strings in a query system can be easily associated with typographical errors. While globally unique identifiers univocally address a taxon name, they can hardly be used for querying a database manually. Thus, matching algorithms are often used to overcome misspelled names in query systems in several data repositories worldwide. In order to improve users’ experience in the use of FlorItaly, the Portal to the Flora of Italy, a near match algorithm to resolve misspelled scientific names has been integrated in the query systems. In addition, a novel tool in FlorItaly, capable of rapidly aligning any list of names to the nomenclatural backbone provided by the national checklists, has been developed. This manuscript aims at describing the potential of these new tools.
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spelling pubmed-81535512021-05-27 Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy Conti, Matteo Nimis, Pier Luigi Martellos, Stefano Plants (Basel) Article Scientific names are not part of everyday language in any modern country, and their input as strings in a query system can be easily associated with typographical errors. While globally unique identifiers univocally address a taxon name, they can hardly be used for querying a database manually. Thus, matching algorithms are often used to overcome misspelled names in query systems in several data repositories worldwide. In order to improve users’ experience in the use of FlorItaly, the Portal to the Flora of Italy, a near match algorithm to resolve misspelled scientific names has been integrated in the query systems. In addition, a novel tool in FlorItaly, capable of rapidly aligning any list of names to the nomenclatural backbone provided by the national checklists, has been developed. This manuscript aims at describing the potential of these new tools. MDPI 2021-05-13 /pmc/articles/PMC8153551/ /pubmed/34068389 http://dx.doi.org/10.3390/plants10050974 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Conti, Matteo
Nimis, Pier Luigi
Martellos, Stefano
Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy
title Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy
title_full Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy
title_fullStr Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy
title_full_unstemmed Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy
title_short Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy
title_sort match algorithms for scientific names in floritaly, the portal to the flora of italy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8153551/
https://www.ncbi.nlm.nih.gov/pubmed/34068389
http://dx.doi.org/10.3390/plants10050974
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