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Automated Calibration of a Poly(oxymethylene) Dimethyl Ether Oxidation Mechanism Using the Knowledge Graph Technology

[Image: see text] In this paper, we develop a knowledge graph-based framework for the automated calibration of combustion reaction mechanisms and demonstrate its effectiveness on a case study of poly(oxymethylene)dimethyl ether (PODE(n), where n = 3) oxidation. We develop an ontological representati...

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Autores principales: Bai, Jiaru, Geeson, Rory, Farazi, Feroz, Mosbach, Sebastian, Akroyd, Jethro, Bringley, Eric J., Kraft, Markus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8154252/
https://www.ncbi.nlm.nih.gov/pubmed/33825473
http://dx.doi.org/10.1021/acs.jcim.0c01322
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author Bai, Jiaru
Geeson, Rory
Farazi, Feroz
Mosbach, Sebastian
Akroyd, Jethro
Bringley, Eric J.
Kraft, Markus
author_facet Bai, Jiaru
Geeson, Rory
Farazi, Feroz
Mosbach, Sebastian
Akroyd, Jethro
Bringley, Eric J.
Kraft, Markus
author_sort Bai, Jiaru
collection PubMed
description [Image: see text] In this paper, we develop a knowledge graph-based framework for the automated calibration of combustion reaction mechanisms and demonstrate its effectiveness on a case study of poly(oxymethylene)dimethyl ether (PODE(n), where n = 3) oxidation. We develop an ontological representation for combustion experiments, OntoChemExp, that allows for the semantic enrichment of experiments within the J-Park simulator (JPS, theworldavatar.com), an existing cross-domain knowledge graph. OntoChemExp is fully capable of supporting experimental results in the Process Informatics Model (PrIMe) database. Following this, a set of software agents are developed to perform experimental result retrieval, sensitivity analysis, and calibration tasks. The sensitivity analysis agent is used for both generic sensitivity analyses and reaction selection for subsequent calibration. The calibration process is performed as a sampling task, followed by an optimization task. The agents are designed for use with generic models but are demonstrated with ignition delay time and laminar flame speed simulations. We find that calibration times are reduced, while accuracy is increased compared to manual calibration, achieving a 79% decrease in the objective function value, as defined in this study. Further, we demonstrate how this workflow is implemented as an extension of the JPS.
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spelling pubmed-81542522021-05-27 Automated Calibration of a Poly(oxymethylene) Dimethyl Ether Oxidation Mechanism Using the Knowledge Graph Technology Bai, Jiaru Geeson, Rory Farazi, Feroz Mosbach, Sebastian Akroyd, Jethro Bringley, Eric J. Kraft, Markus J Chem Inf Model [Image: see text] In this paper, we develop a knowledge graph-based framework for the automated calibration of combustion reaction mechanisms and demonstrate its effectiveness on a case study of poly(oxymethylene)dimethyl ether (PODE(n), where n = 3) oxidation. We develop an ontological representation for combustion experiments, OntoChemExp, that allows for the semantic enrichment of experiments within the J-Park simulator (JPS, theworldavatar.com), an existing cross-domain knowledge graph. OntoChemExp is fully capable of supporting experimental results in the Process Informatics Model (PrIMe) database. Following this, a set of software agents are developed to perform experimental result retrieval, sensitivity analysis, and calibration tasks. The sensitivity analysis agent is used for both generic sensitivity analyses and reaction selection for subsequent calibration. The calibration process is performed as a sampling task, followed by an optimization task. The agents are designed for use with generic models but are demonstrated with ignition delay time and laminar flame speed simulations. We find that calibration times are reduced, while accuracy is increased compared to manual calibration, achieving a 79% decrease in the objective function value, as defined in this study. Further, we demonstrate how this workflow is implemented as an extension of the JPS. American Chemical Society 2021-04-07 2021-04-26 /pmc/articles/PMC8154252/ /pubmed/33825473 http://dx.doi.org/10.1021/acs.jcim.0c01322 Text en © 2021 American Chemical Society Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Bai, Jiaru
Geeson, Rory
Farazi, Feroz
Mosbach, Sebastian
Akroyd, Jethro
Bringley, Eric J.
Kraft, Markus
Automated Calibration of a Poly(oxymethylene) Dimethyl Ether Oxidation Mechanism Using the Knowledge Graph Technology
title Automated Calibration of a Poly(oxymethylene) Dimethyl Ether Oxidation Mechanism Using the Knowledge Graph Technology
title_full Automated Calibration of a Poly(oxymethylene) Dimethyl Ether Oxidation Mechanism Using the Knowledge Graph Technology
title_fullStr Automated Calibration of a Poly(oxymethylene) Dimethyl Ether Oxidation Mechanism Using the Knowledge Graph Technology
title_full_unstemmed Automated Calibration of a Poly(oxymethylene) Dimethyl Ether Oxidation Mechanism Using the Knowledge Graph Technology
title_short Automated Calibration of a Poly(oxymethylene) Dimethyl Ether Oxidation Mechanism Using the Knowledge Graph Technology
title_sort automated calibration of a poly(oxymethylene) dimethyl ether oxidation mechanism using the knowledge graph technology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8154252/
https://www.ncbi.nlm.nih.gov/pubmed/33825473
http://dx.doi.org/10.1021/acs.jcim.0c01322
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