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Prediction of Patient Management in COVID-19 Using Deep Learning-Based Fully Automated Extraction of Cardiothoracic CT Metrics and Laboratory Findings

OBJECTIVE: To extract pulmonary and cardiovascular metrics from chest CTs of patients with coronavirus disease 2019 (COVID-19) using a fully automated deep learning-based approach and assess their potential to predict patient management. MATERIALS AND METHODS: All initial chest CTs of patients who t...

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Autores principales: Weikert, Thomas, Rapaka, Saikiran, Grbic, Sasa, Re, Thomas, Chaganti, Shikha, Winkel, David J., Anastasopoulos, Constantin, Niemann, Tilo, Wiggli, Benedikt J., Bremerich, Jens, Twerenbold, Raphael, Sommer, Gregor, Comaniciu, Dorin, Sauter, Alexander W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Korean Society of Radiology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8154782/
https://www.ncbi.nlm.nih.gov/pubmed/33686818
http://dx.doi.org/10.3348/kjr.2020.0994
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author Weikert, Thomas
Rapaka, Saikiran
Grbic, Sasa
Re, Thomas
Chaganti, Shikha
Winkel, David J.
Anastasopoulos, Constantin
Niemann, Tilo
Wiggli, Benedikt J.
Bremerich, Jens
Twerenbold, Raphael
Sommer, Gregor
Comaniciu, Dorin
Sauter, Alexander W.
author_facet Weikert, Thomas
Rapaka, Saikiran
Grbic, Sasa
Re, Thomas
Chaganti, Shikha
Winkel, David J.
Anastasopoulos, Constantin
Niemann, Tilo
Wiggli, Benedikt J.
Bremerich, Jens
Twerenbold, Raphael
Sommer, Gregor
Comaniciu, Dorin
Sauter, Alexander W.
author_sort Weikert, Thomas
collection PubMed
description OBJECTIVE: To extract pulmonary and cardiovascular metrics from chest CTs of patients with coronavirus disease 2019 (COVID-19) using a fully automated deep learning-based approach and assess their potential to predict patient management. MATERIALS AND METHODS: All initial chest CTs of patients who tested positive for severe acute respiratory syndrome coronavirus 2 at our emergency department between March 25 and April 25, 2020, were identified (n = 120). Three patient management groups were defined: group 1 (outpatient), group 2 (general ward), and group 3 (intensive care unit [ICU]). Multiple pulmonary and cardiovascular metrics were extracted from the chest CT images using deep learning. Additionally, six laboratory findings indicating inflammation and cellular damage were considered. Differences in CT metrics, laboratory findings, and demographics between the patient management groups were assessed. The potential of these parameters to predict patients' needs for intensive care (yes/no) was analyzed using logistic regression and receiver operating characteristic curves. Internal and external validity were assessed using 109 independent chest CT scans. RESULTS: While demographic parameters alone (sex and age) were not sufficient to predict ICU management status, both CT metrics alone (including both pulmonary and cardiovascular metrics; area under the curve [AUC] = 0.88; 95% confidence interval [CI] = 0.79–0.97) and laboratory findings alone (C-reactive protein, lactate dehydrogenase, white blood cell count, and albumin; AUC = 0.86; 95% CI = 0.77–0.94) were good classifiers. Excellent performance was achieved by a combination of demographic parameters, CT metrics, and laboratory findings (AUC = 0.91; 95% CI = 0.85–0.98). Application of a model that combined both pulmonary CT metrics and demographic parameters on a dataset from another hospital indicated its external validity (AUC = 0.77; 95% CI = 0.66–0.88). CONCLUSION: Chest CT of patients with COVID-19 contains valuable information that can be accessed using automated image analysis. These metrics are useful for the prediction of patient management.
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spelling pubmed-81547822021-06-08 Prediction of Patient Management in COVID-19 Using Deep Learning-Based Fully Automated Extraction of Cardiothoracic CT Metrics and Laboratory Findings Weikert, Thomas Rapaka, Saikiran Grbic, Sasa Re, Thomas Chaganti, Shikha Winkel, David J. Anastasopoulos, Constantin Niemann, Tilo Wiggli, Benedikt J. Bremerich, Jens Twerenbold, Raphael Sommer, Gregor Comaniciu, Dorin Sauter, Alexander W. Korean J Radiol Thoracic Imaging OBJECTIVE: To extract pulmonary and cardiovascular metrics from chest CTs of patients with coronavirus disease 2019 (COVID-19) using a fully automated deep learning-based approach and assess their potential to predict patient management. MATERIALS AND METHODS: All initial chest CTs of patients who tested positive for severe acute respiratory syndrome coronavirus 2 at our emergency department between March 25 and April 25, 2020, were identified (n = 120). Three patient management groups were defined: group 1 (outpatient), group 2 (general ward), and group 3 (intensive care unit [ICU]). Multiple pulmonary and cardiovascular metrics were extracted from the chest CT images using deep learning. Additionally, six laboratory findings indicating inflammation and cellular damage were considered. Differences in CT metrics, laboratory findings, and demographics between the patient management groups were assessed. The potential of these parameters to predict patients' needs for intensive care (yes/no) was analyzed using logistic regression and receiver operating characteristic curves. Internal and external validity were assessed using 109 independent chest CT scans. RESULTS: While demographic parameters alone (sex and age) were not sufficient to predict ICU management status, both CT metrics alone (including both pulmonary and cardiovascular metrics; area under the curve [AUC] = 0.88; 95% confidence interval [CI] = 0.79–0.97) and laboratory findings alone (C-reactive protein, lactate dehydrogenase, white blood cell count, and albumin; AUC = 0.86; 95% CI = 0.77–0.94) were good classifiers. Excellent performance was achieved by a combination of demographic parameters, CT metrics, and laboratory findings (AUC = 0.91; 95% CI = 0.85–0.98). Application of a model that combined both pulmonary CT metrics and demographic parameters on a dataset from another hospital indicated its external validity (AUC = 0.77; 95% CI = 0.66–0.88). CONCLUSION: Chest CT of patients with COVID-19 contains valuable information that can be accessed using automated image analysis. These metrics are useful for the prediction of patient management. The Korean Society of Radiology 2021-06 2021-02-24 /pmc/articles/PMC8154782/ /pubmed/33686818 http://dx.doi.org/10.3348/kjr.2020.0994 Text en Copyright © 2021 The Korean Society of Radiology https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Thoracic Imaging
Weikert, Thomas
Rapaka, Saikiran
Grbic, Sasa
Re, Thomas
Chaganti, Shikha
Winkel, David J.
Anastasopoulos, Constantin
Niemann, Tilo
Wiggli, Benedikt J.
Bremerich, Jens
Twerenbold, Raphael
Sommer, Gregor
Comaniciu, Dorin
Sauter, Alexander W.
Prediction of Patient Management in COVID-19 Using Deep Learning-Based Fully Automated Extraction of Cardiothoracic CT Metrics and Laboratory Findings
title Prediction of Patient Management in COVID-19 Using Deep Learning-Based Fully Automated Extraction of Cardiothoracic CT Metrics and Laboratory Findings
title_full Prediction of Patient Management in COVID-19 Using Deep Learning-Based Fully Automated Extraction of Cardiothoracic CT Metrics and Laboratory Findings
title_fullStr Prediction of Patient Management in COVID-19 Using Deep Learning-Based Fully Automated Extraction of Cardiothoracic CT Metrics and Laboratory Findings
title_full_unstemmed Prediction of Patient Management in COVID-19 Using Deep Learning-Based Fully Automated Extraction of Cardiothoracic CT Metrics and Laboratory Findings
title_short Prediction of Patient Management in COVID-19 Using Deep Learning-Based Fully Automated Extraction of Cardiothoracic CT Metrics and Laboratory Findings
title_sort prediction of patient management in covid-19 using deep learning-based fully automated extraction of cardiothoracic ct metrics and laboratory findings
topic Thoracic Imaging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8154782/
https://www.ncbi.nlm.nih.gov/pubmed/33686818
http://dx.doi.org/10.3348/kjr.2020.0994
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