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Explaining deep neural networks for knowledge discovery in electrocardiogram analysis

Deep learning-based tools may annotate and interpret medical data more quickly, consistently, and accurately than medical doctors. However, as medical doctors are ultimately responsible for clinical decision-making, any deep learning-based prediction should be accompanied by an explanation that a hu...

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Autores principales: Hicks, Steven A., Isaksen, Jonas L., Thambawita, Vajira, Ghouse, Jonas, Ahlberg, Gustav, Linneberg, Allan, Grarup, Niels, Strümke, Inga, Ellervik, Christina, Olesen, Morten Salling, Hansen, Torben, Graff, Claus, Holstein-Rathlou, Niels-Henrik, Halvorsen, Pål, Maleckar, Mary M., Riegler, Michael A., Kanters, Jørgen K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8154909/
https://www.ncbi.nlm.nih.gov/pubmed/34040033
http://dx.doi.org/10.1038/s41598-021-90285-5
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author Hicks, Steven A.
Isaksen, Jonas L.
Thambawita, Vajira
Ghouse, Jonas
Ahlberg, Gustav
Linneberg, Allan
Grarup, Niels
Strümke, Inga
Ellervik, Christina
Olesen, Morten Salling
Hansen, Torben
Graff, Claus
Holstein-Rathlou, Niels-Henrik
Halvorsen, Pål
Maleckar, Mary M.
Riegler, Michael A.
Kanters, Jørgen K.
author_facet Hicks, Steven A.
Isaksen, Jonas L.
Thambawita, Vajira
Ghouse, Jonas
Ahlberg, Gustav
Linneberg, Allan
Grarup, Niels
Strümke, Inga
Ellervik, Christina
Olesen, Morten Salling
Hansen, Torben
Graff, Claus
Holstein-Rathlou, Niels-Henrik
Halvorsen, Pål
Maleckar, Mary M.
Riegler, Michael A.
Kanters, Jørgen K.
author_sort Hicks, Steven A.
collection PubMed
description Deep learning-based tools may annotate and interpret medical data more quickly, consistently, and accurately than medical doctors. However, as medical doctors are ultimately responsible for clinical decision-making, any deep learning-based prediction should be accompanied by an explanation that a human can understand. We present an approach called electrocardiogram gradient class activation map (ECGradCAM), which is used to generate attention maps and explain the reasoning behind deep learning-based decision-making in ECG analysis. Attention maps may be used in the clinic to aid diagnosis, discover new medical knowledge, and identify novel features and characteristics of medical tests. In this paper, we showcase how ECGradCAM attention maps can unmask how a novel deep learning model measures both amplitudes and intervals in 12-lead electrocardiograms, and we show an example of how attention maps may be used to develop novel ECG features.
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spelling pubmed-81549092021-05-27 Explaining deep neural networks for knowledge discovery in electrocardiogram analysis Hicks, Steven A. Isaksen, Jonas L. Thambawita, Vajira Ghouse, Jonas Ahlberg, Gustav Linneberg, Allan Grarup, Niels Strümke, Inga Ellervik, Christina Olesen, Morten Salling Hansen, Torben Graff, Claus Holstein-Rathlou, Niels-Henrik Halvorsen, Pål Maleckar, Mary M. Riegler, Michael A. Kanters, Jørgen K. Sci Rep Article Deep learning-based tools may annotate and interpret medical data more quickly, consistently, and accurately than medical doctors. However, as medical doctors are ultimately responsible for clinical decision-making, any deep learning-based prediction should be accompanied by an explanation that a human can understand. We present an approach called electrocardiogram gradient class activation map (ECGradCAM), which is used to generate attention maps and explain the reasoning behind deep learning-based decision-making in ECG analysis. Attention maps may be used in the clinic to aid diagnosis, discover new medical knowledge, and identify novel features and characteristics of medical tests. In this paper, we showcase how ECGradCAM attention maps can unmask how a novel deep learning model measures both amplitudes and intervals in 12-lead electrocardiograms, and we show an example of how attention maps may be used to develop novel ECG features. Nature Publishing Group UK 2021-05-26 /pmc/articles/PMC8154909/ /pubmed/34040033 http://dx.doi.org/10.1038/s41598-021-90285-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Hicks, Steven A.
Isaksen, Jonas L.
Thambawita, Vajira
Ghouse, Jonas
Ahlberg, Gustav
Linneberg, Allan
Grarup, Niels
Strümke, Inga
Ellervik, Christina
Olesen, Morten Salling
Hansen, Torben
Graff, Claus
Holstein-Rathlou, Niels-Henrik
Halvorsen, Pål
Maleckar, Mary M.
Riegler, Michael A.
Kanters, Jørgen K.
Explaining deep neural networks for knowledge discovery in electrocardiogram analysis
title Explaining deep neural networks for knowledge discovery in electrocardiogram analysis
title_full Explaining deep neural networks for knowledge discovery in electrocardiogram analysis
title_fullStr Explaining deep neural networks for knowledge discovery in electrocardiogram analysis
title_full_unstemmed Explaining deep neural networks for knowledge discovery in electrocardiogram analysis
title_short Explaining deep neural networks for knowledge discovery in electrocardiogram analysis
title_sort explaining deep neural networks for knowledge discovery in electrocardiogram analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8154909/
https://www.ncbi.nlm.nih.gov/pubmed/34040033
http://dx.doi.org/10.1038/s41598-021-90285-5
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