Cargando…

The quantitative metabolome is shaped by abiotic constraints

Living systems formed and evolved under constraints that govern their interactions with the inorganic world. These interactions are definable using basic physico-chemical principles. Here, we formulate a comprehensive set of ten governing abiotic constraints that define possible quantitative metabol...

Descripción completa

Detalles Bibliográficos
Autores principales:	Akbari, Amir, Yurkovich, James T., Zielinski, Daniel C., Palsson, Bernhard O.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2021
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8155068/ https://www.ncbi.nlm.nih.gov/pubmed/34039963 http://dx.doi.org/10.1038/s41467-021-23214-9

Ejemplares similares

Metabolic homeostasis and growth in abiotic cells
por: Akbari, Amir, et al.
Publicado: (2023)

Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics
por: Bordbar, Aarash, et al.
Publicado: (2017)

Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells
por: Yurkovich, James T., et al.
Publicado: (2017)

MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics
por: Haiman, Zachary B., et al.
Publicado: (2021)

Is the kinetome conserved?
por: Palsson, Bernhard O, et al.
Publicado: (2022)

Systems biology as an emerging paradigm in transfusion medicine
por: Yurkovich, James T., et al.
Publicado: (2018)

Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials
por: Yurkovich, James T., et al.
Publicado: (2018)

Multiple constraints on urban bird communication: both abiotic and biotic noise shape songs in cities
por: To, Ann W Y, et al.
Publicado: (2021)

COBRApy: COnstraints-Based Reconstruction and Analysis for Python
por: Ebrahim, Ali, et al.
Publicado: (2013)

Positively charged mineral surfaces promoted the accumulation of organic intermediates at the origin of metabolism
por: Akbari, Amir, et al.
Publicado: (2022)

Principles of proteome allocation are revealed using proteomic data and genome-scale models
por: Yang, Laurence, et al.
Publicado: (2016)

The Staphylococcus aureus Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures
por: Choudhary, Kumari S., et al.
Publicado: (2018)

Biotic and Abiotic Constraints in Mungbean Production—Progress in Genetic Improvement
por: Nair, Ramakrishnan M., et al.
Publicado: (2019)

Modeling genome-wide enzyme evolution predicts strong epistasis underlying catalytic turnover rates
por: Heckmann, David, et al.
Publicado: (2018)

Topological and kinetic determinants of the modal matrices of dynamic models of metabolism
por: Du, Bin, et al.
Publicado: (2017)

Modelling cassava production and pest management under biotic and abiotic constraints
por: Alonso Chavez, Vasthi, et al.
Publicado: (2021)

A quantitative approach for determining the role of geometrical constraints when shaping mesenchymal condensations
por: Onesto, Valentina, et al.
Publicado: (2019)

BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree
por: Norsigian, Charles J, et al.
Publicado: (2020)

Effects of abiotic stressors on lutein production in the green microalga Dunaliella salina
por: Fu, Weiqi, et al.
Publicado: (2014)

Connecting extracellular metabolomic measurements to intracellular flux states in yeast
por: Mo, Monica L, et al.
Publicado: (2009)

The Expanding Computational Toolbox for Engineering Microbial Phenotypes at the Genome Scale
por: Zielinski, Daniel Craig, et al.
Publicado: (2020)

Quantitative constraints on flood variability in the rock record
por: McLeod, Jonah S., et al.
Publicado: (2023)

Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction
por: Raghunathan, Anu, et al.
Publicado: (2009)

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions
por: Kavvas, Erol S., et al.
Publicado: (2018)

Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data
por: Phaneuf, Patrick V., et al.
Publicado: (2021)

The use of metabolomics to dissect plant responses to abiotic stresses
por: Obata, Toshihiro, et al.
Publicado: (2012)

Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo
por: Gao, Ye, et al.
Publicado: (2021)

Differential Expression Analysis Utilizing Condition-Specific Metabolic Pathways
por: Mattei, Gianluca, et al.
Publicado: (2023)

A Focus on Natural Variation for Abiotic Constraints Response in the Model Species Arabidopsis thaliana
por: Lefebvre, Valérie, et al.
Publicado: (2009)

Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity
por: Phaneuf, Patrick V., et al.
Publicado: (2020)

Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants
por: Arbona, Vicent, et al.
Publicado: (2013)

Barley Root Proteome and Metabolome in Response to Cytokinin and Abiotic Stimuli
por: Berka, Miroslav, et al.
Publicado: (2020)

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits
por: Seif, Yara, et al.
Publicado: (2018)

The rliability of x-ray constraints of intrinsic cluster shapes
por: Buote, David A., et al.
Publicado: (1994)

Ocimum metabolomics in response to abiotic stresses: Cold, flood, drought and salinity
por: Rastogi, Shubhra, et al.
Publicado: (2019)

Metabolomics to Characterize Adaptive and Signaling Responses in Legume Crops under Abiotic Stresses
por: Bueno, Paula C. P., et al.
Publicado: (2020)

Plant Responses to Abiotic Stresses and Rhizobacterial Biostimulants: Metabolomics and Epigenetics Perspectives
por: Lephatsi, Motseoa M., et al.
Publicado: (2021)

Biostimulants for Plant Growth and Mitigation of Abiotic Stresses: A Metabolomics Perspective
por: Nephali, Lerato, et al.
Publicado: (2020)

Assembly Processes under Severe Abiotic Filtering: Adaptation Mechanisms of Weed Vegetation to the Gradient of Soil Constraints
por: Nikolic, Nina, et al.
Publicado: (2014)

Approaches and constraints to identification and quantitation of asbestos fibers
por: Langer, Arthur M.
Publicado: (1974)

Cannot write session to /tmp/vufind_sessions/sess_f9p8ojstbeu7rref04dmir6743