Cargando…
Polymorphism of genetic ambigrams
Double synonyms in the genetic code can be used as a tool to test competing hypotheses regarding ambigrammatic narnavirus genomes. Applying the analysis to recent observations of Culex narnavirus 1 and Zhejiang mosquito virus 3 ambigrammatic viruses indicates that the open reading frame on the compl...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8155312/ https://www.ncbi.nlm.nih.gov/pubmed/34055388 http://dx.doi.org/10.1093/ve/veab038 |
_version_ | 1783699173805129728 |
---|---|
author | Dudas, Gytis Huber, Greg Wilkinson, Michael Yllanes, David |
author_facet | Dudas, Gytis Huber, Greg Wilkinson, Michael Yllanes, David |
author_sort | Dudas, Gytis |
collection | PubMed |
description | Double synonyms in the genetic code can be used as a tool to test competing hypotheses regarding ambigrammatic narnavirus genomes. Applying the analysis to recent observations of Culex narnavirus 1 and Zhejiang mosquito virus 3 ambigrammatic viruses indicates that the open reading frame on the complementary strand of the segment coding for RNA-dependent RNA polymerase does not code for a functional protein. Culex narnavirus 1 has been shown to possess a second segment, also ambigrammatic, termed ‘Robin’. We find a comparable segment for Zhejiang mosquito virus 3, a moderately diverged relative of Culex narnavirus 1. Our analysis of Robin polymorphisms suggests that its reverse open reading frame also does not code for a functional protein. We make a hypothesis about its role. |
format | Online Article Text |
id | pubmed-8155312 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-81553122021-05-28 Polymorphism of genetic ambigrams Dudas, Gytis Huber, Greg Wilkinson, Michael Yllanes, David Virus Evol Research Article Double synonyms in the genetic code can be used as a tool to test competing hypotheses regarding ambigrammatic narnavirus genomes. Applying the analysis to recent observations of Culex narnavirus 1 and Zhejiang mosquito virus 3 ambigrammatic viruses indicates that the open reading frame on the complementary strand of the segment coding for RNA-dependent RNA polymerase does not code for a functional protein. Culex narnavirus 1 has been shown to possess a second segment, also ambigrammatic, termed ‘Robin’. We find a comparable segment for Zhejiang mosquito virus 3, a moderately diverged relative of Culex narnavirus 1. Our analysis of Robin polymorphisms suggests that its reverse open reading frame also does not code for a functional protein. We make a hypothesis about its role. Oxford University Press 2021-04-19 /pmc/articles/PMC8155312/ /pubmed/34055388 http://dx.doi.org/10.1093/ve/veab038 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Dudas, Gytis Huber, Greg Wilkinson, Michael Yllanes, David Polymorphism of genetic ambigrams |
title | Polymorphism of genetic ambigrams |
title_full | Polymorphism of genetic ambigrams |
title_fullStr | Polymorphism of genetic ambigrams |
title_full_unstemmed | Polymorphism of genetic ambigrams |
title_short | Polymorphism of genetic ambigrams |
title_sort | polymorphism of genetic ambigrams |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8155312/ https://www.ncbi.nlm.nih.gov/pubmed/34055388 http://dx.doi.org/10.1093/ve/veab038 |
work_keys_str_mv | AT dudasgytis polymorphismofgeneticambigrams AT hubergreg polymorphismofgeneticambigrams AT wilkinsonmichael polymorphismofgeneticambigrams AT yllanesdavid polymorphismofgeneticambigrams |