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An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection

Atrial Fibrillation (AF) is the most common type of cardiac arrhythmia. Early diagnosis of AF helps to improve therapy and prognosis. Machine Learning (ML) has been successfully applied to improve the effectiveness of Computer-Aided Diagnosis (CADx) systems for AF detection. Presenting an explanatio...

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Autores principales: Rouhi, Rahimeh, Clausel, Marianne, Oster, Julien, Lauer, Fabien
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8155476/
https://www.ncbi.nlm.nih.gov/pubmed/34054575
http://dx.doi.org/10.3389/fphys.2021.657304
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author Rouhi, Rahimeh
Clausel, Marianne
Oster, Julien
Lauer, Fabien
author_facet Rouhi, Rahimeh
Clausel, Marianne
Oster, Julien
Lauer, Fabien
author_sort Rouhi, Rahimeh
collection PubMed
description Atrial Fibrillation (AF) is the most common type of cardiac arrhythmia. Early diagnosis of AF helps to improve therapy and prognosis. Machine Learning (ML) has been successfully applied to improve the effectiveness of Computer-Aided Diagnosis (CADx) systems for AF detection. Presenting an explanation for the decision made by an ML model is considerable from the cardiologists' point of view, which decreases the complexity of the ML model and can provide tangible information in their diagnosis. In this paper, a range of explanation techniques is applied to hand-crafted features based ML models for heart rhythm classification. We validate the impact of the techniques by applying feature selection and classification to the 2017 CinC/PhysioNet challenge dataset. The results show the effectiveness and efficiency of SHapley Additive exPlanations (SHAP) technique along with Random Forest (RF) for the classification of the Electrocardiogram (ECG) signals for AF detection with a mean F-score of 0.746 compared to 0.706 for a technique based on the same features based on a cascaded SVM approach. The study also highlights how this interpretable hand-crafted feature-based model can provide cardiologists with a more compact set of features and tangible information in their diagnosis.
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spelling pubmed-81554762021-05-28 An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection Rouhi, Rahimeh Clausel, Marianne Oster, Julien Lauer, Fabien Front Physiol Physiology Atrial Fibrillation (AF) is the most common type of cardiac arrhythmia. Early diagnosis of AF helps to improve therapy and prognosis. Machine Learning (ML) has been successfully applied to improve the effectiveness of Computer-Aided Diagnosis (CADx) systems for AF detection. Presenting an explanation for the decision made by an ML model is considerable from the cardiologists' point of view, which decreases the complexity of the ML model and can provide tangible information in their diagnosis. In this paper, a range of explanation techniques is applied to hand-crafted features based ML models for heart rhythm classification. We validate the impact of the techniques by applying feature selection and classification to the 2017 CinC/PhysioNet challenge dataset. The results show the effectiveness and efficiency of SHapley Additive exPlanations (SHAP) technique along with Random Forest (RF) for the classification of the Electrocardiogram (ECG) signals for AF detection with a mean F-score of 0.746 compared to 0.706 for a technique based on the same features based on a cascaded SVM approach. The study also highlights how this interpretable hand-crafted feature-based model can provide cardiologists with a more compact set of features and tangible information in their diagnosis. Frontiers Media S.A. 2021-05-13 /pmc/articles/PMC8155476/ /pubmed/34054575 http://dx.doi.org/10.3389/fphys.2021.657304 Text en Copyright © 2021 Rouhi, Clausel, Oster and Lauer. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Physiology
Rouhi, Rahimeh
Clausel, Marianne
Oster, Julien
Lauer, Fabien
An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection
title An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection
title_full An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection
title_fullStr An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection
title_full_unstemmed An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection
title_short An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection
title_sort interpretable hand-crafted feature-based model for atrial fibrillation detection
topic Physiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8155476/
https://www.ncbi.nlm.nih.gov/pubmed/34054575
http://dx.doi.org/10.3389/fphys.2021.657304
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