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An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection
Atrial Fibrillation (AF) is the most common type of cardiac arrhythmia. Early diagnosis of AF helps to improve therapy and prognosis. Machine Learning (ML) has been successfully applied to improve the effectiveness of Computer-Aided Diagnosis (CADx) systems for AF detection. Presenting an explanatio...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8155476/ https://www.ncbi.nlm.nih.gov/pubmed/34054575 http://dx.doi.org/10.3389/fphys.2021.657304 |
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author | Rouhi, Rahimeh Clausel, Marianne Oster, Julien Lauer, Fabien |
author_facet | Rouhi, Rahimeh Clausel, Marianne Oster, Julien Lauer, Fabien |
author_sort | Rouhi, Rahimeh |
collection | PubMed |
description | Atrial Fibrillation (AF) is the most common type of cardiac arrhythmia. Early diagnosis of AF helps to improve therapy and prognosis. Machine Learning (ML) has been successfully applied to improve the effectiveness of Computer-Aided Diagnosis (CADx) systems for AF detection. Presenting an explanation for the decision made by an ML model is considerable from the cardiologists' point of view, which decreases the complexity of the ML model and can provide tangible information in their diagnosis. In this paper, a range of explanation techniques is applied to hand-crafted features based ML models for heart rhythm classification. We validate the impact of the techniques by applying feature selection and classification to the 2017 CinC/PhysioNet challenge dataset. The results show the effectiveness and efficiency of SHapley Additive exPlanations (SHAP) technique along with Random Forest (RF) for the classification of the Electrocardiogram (ECG) signals for AF detection with a mean F-score of 0.746 compared to 0.706 for a technique based on the same features based on a cascaded SVM approach. The study also highlights how this interpretable hand-crafted feature-based model can provide cardiologists with a more compact set of features and tangible information in their diagnosis. |
format | Online Article Text |
id | pubmed-8155476 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81554762021-05-28 An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection Rouhi, Rahimeh Clausel, Marianne Oster, Julien Lauer, Fabien Front Physiol Physiology Atrial Fibrillation (AF) is the most common type of cardiac arrhythmia. Early diagnosis of AF helps to improve therapy and prognosis. Machine Learning (ML) has been successfully applied to improve the effectiveness of Computer-Aided Diagnosis (CADx) systems for AF detection. Presenting an explanation for the decision made by an ML model is considerable from the cardiologists' point of view, which decreases the complexity of the ML model and can provide tangible information in their diagnosis. In this paper, a range of explanation techniques is applied to hand-crafted features based ML models for heart rhythm classification. We validate the impact of the techniques by applying feature selection and classification to the 2017 CinC/PhysioNet challenge dataset. The results show the effectiveness and efficiency of SHapley Additive exPlanations (SHAP) technique along with Random Forest (RF) for the classification of the Electrocardiogram (ECG) signals for AF detection with a mean F-score of 0.746 compared to 0.706 for a technique based on the same features based on a cascaded SVM approach. The study also highlights how this interpretable hand-crafted feature-based model can provide cardiologists with a more compact set of features and tangible information in their diagnosis. Frontiers Media S.A. 2021-05-13 /pmc/articles/PMC8155476/ /pubmed/34054575 http://dx.doi.org/10.3389/fphys.2021.657304 Text en Copyright © 2021 Rouhi, Clausel, Oster and Lauer. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Physiology Rouhi, Rahimeh Clausel, Marianne Oster, Julien Lauer, Fabien An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection |
title | An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection |
title_full | An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection |
title_fullStr | An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection |
title_full_unstemmed | An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection |
title_short | An Interpretable Hand-Crafted Feature-Based Model for Atrial Fibrillation Detection |
title_sort | interpretable hand-crafted feature-based model for atrial fibrillation detection |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8155476/ https://www.ncbi.nlm.nih.gov/pubmed/34054575 http://dx.doi.org/10.3389/fphys.2021.657304 |
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