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CCDC137 Is a Prognostic Biomarker and Correlates With Immunosuppressive Tumor Microenvironment Based on Pan-Cancer Analysis
BACKGROUND: The coiled-coil domain containing (CCDC) family proteins have important biological functions in various diseases. However, the coiled-coil domain containing 137 (CCDC137) was rarely studied. We aim to investigate the role of CCDC137 in pan-cancer. METHODS: CCDC137 expression was evaluate...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8155610/ https://www.ncbi.nlm.nih.gov/pubmed/34055889 http://dx.doi.org/10.3389/fmolb.2021.674863 |
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author | Guo, Lihao Li, Boxin Lu, Zhaohong Liang, Hairong Yang, Hui Chen, Yuting Zhu, Shiheng Zeng, Minjuan Wei, Yixian Liu, Tonggong Jiang, Tikeng Xuan, Mei Tang, Huanwen |
author_facet | Guo, Lihao Li, Boxin Lu, Zhaohong Liang, Hairong Yang, Hui Chen, Yuting Zhu, Shiheng Zeng, Minjuan Wei, Yixian Liu, Tonggong Jiang, Tikeng Xuan, Mei Tang, Huanwen |
author_sort | Guo, Lihao |
collection | PubMed |
description | BACKGROUND: The coiled-coil domain containing (CCDC) family proteins have important biological functions in various diseases. However, the coiled-coil domain containing 137 (CCDC137) was rarely studied. We aim to investigate the role of CCDC137 in pan-cancer. METHODS: CCDC137 expression was evaluated in RNA sequence expression profilers of pan-cancer and normal tissues from The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) database. The influence of CCDC137 on the prognosis of tumor patients was analyzed using clinical survival data from TCGA. Function and pathway enrichment analysis was performed to explore the role of CCDC137 using the R package “clusterProfiler.” We further analyzed the correlation of immune cell infiltration score of TCGA samples and CCDC137 expression using TIMER2 online database. RESULTS: CCDC137 was over-expressed and associated with worse survival status in various tumor types. CCDC137 expression was positively correlated with tumor associated macrophages (TAMs) and cancer associated fibroblasts (CAFs) in Lower Grade Glioma (LGG) and Uveal Melanoma (UVM). In addition, high CCDC137 expression was positively correlated with most immunosuppressive genes, including TGFB1, PD-L1, and IL10RB in LGG and UVM. CONCLUSIONS: Our study identified CCDC137 as an oncogene and predictor of worse survival in most tumor types. High CCDC137 may contribute to elevated infiltration of TAMs and CAFs and be associated with tumor immunosuppressive status. |
format | Online Article Text |
id | pubmed-8155610 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81556102021-05-28 CCDC137 Is a Prognostic Biomarker and Correlates With Immunosuppressive Tumor Microenvironment Based on Pan-Cancer Analysis Guo, Lihao Li, Boxin Lu, Zhaohong Liang, Hairong Yang, Hui Chen, Yuting Zhu, Shiheng Zeng, Minjuan Wei, Yixian Liu, Tonggong Jiang, Tikeng Xuan, Mei Tang, Huanwen Front Mol Biosci Molecular Biosciences BACKGROUND: The coiled-coil domain containing (CCDC) family proteins have important biological functions in various diseases. However, the coiled-coil domain containing 137 (CCDC137) was rarely studied. We aim to investigate the role of CCDC137 in pan-cancer. METHODS: CCDC137 expression was evaluated in RNA sequence expression profilers of pan-cancer and normal tissues from The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) database. The influence of CCDC137 on the prognosis of tumor patients was analyzed using clinical survival data from TCGA. Function and pathway enrichment analysis was performed to explore the role of CCDC137 using the R package “clusterProfiler.” We further analyzed the correlation of immune cell infiltration score of TCGA samples and CCDC137 expression using TIMER2 online database. RESULTS: CCDC137 was over-expressed and associated with worse survival status in various tumor types. CCDC137 expression was positively correlated with tumor associated macrophages (TAMs) and cancer associated fibroblasts (CAFs) in Lower Grade Glioma (LGG) and Uveal Melanoma (UVM). In addition, high CCDC137 expression was positively correlated with most immunosuppressive genes, including TGFB1, PD-L1, and IL10RB in LGG and UVM. CONCLUSIONS: Our study identified CCDC137 as an oncogene and predictor of worse survival in most tumor types. High CCDC137 may contribute to elevated infiltration of TAMs and CAFs and be associated with tumor immunosuppressive status. Frontiers Media S.A. 2021-05-13 /pmc/articles/PMC8155610/ /pubmed/34055889 http://dx.doi.org/10.3389/fmolb.2021.674863 Text en Copyright © 2021 Guo, Li, Lu, Liang, Yang, Chen, Zhu, Zeng, Wei, Liu, Jiang, Xuan and Tang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Guo, Lihao Li, Boxin Lu, Zhaohong Liang, Hairong Yang, Hui Chen, Yuting Zhu, Shiheng Zeng, Minjuan Wei, Yixian Liu, Tonggong Jiang, Tikeng Xuan, Mei Tang, Huanwen CCDC137 Is a Prognostic Biomarker and Correlates With Immunosuppressive Tumor Microenvironment Based on Pan-Cancer Analysis |
title | CCDC137 Is a Prognostic Biomarker and Correlates With Immunosuppressive Tumor Microenvironment Based on Pan-Cancer Analysis |
title_full | CCDC137 Is a Prognostic Biomarker and Correlates With Immunosuppressive Tumor Microenvironment Based on Pan-Cancer Analysis |
title_fullStr | CCDC137 Is a Prognostic Biomarker and Correlates With Immunosuppressive Tumor Microenvironment Based on Pan-Cancer Analysis |
title_full_unstemmed | CCDC137 Is a Prognostic Biomarker and Correlates With Immunosuppressive Tumor Microenvironment Based on Pan-Cancer Analysis |
title_short | CCDC137 Is a Prognostic Biomarker and Correlates With Immunosuppressive Tumor Microenvironment Based on Pan-Cancer Analysis |
title_sort | ccdc137 is a prognostic biomarker and correlates with immunosuppressive tumor microenvironment based on pan-cancer analysis |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8155610/ https://www.ncbi.nlm.nih.gov/pubmed/34055889 http://dx.doi.org/10.3389/fmolb.2021.674863 |
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