The complete chloroplast genome sequence of Ehrharta erecta Lam. (Poaceae)

The complete chloroplast (cp) genome of Ehrharta erecta was sequenced and assembled for the first time. In this study, The total genome size is 134,511 bp in length and demonstrates a typical quadripartite structure containing a large single copy (LSC, 95,227 bp) and a small single copy (SSC, 12,306...

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Detalles Bibliográficos
Autores principales: Song, Wei-Cai, Feng, Qi, Zhang, Yun-Jiao, Shi, Chao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8158213/
https://www.ncbi.nlm.nih.gov/pubmed/34104759
http://dx.doi.org/10.1080/23802359.2021.1931503
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author Song, Wei-Cai
Feng, Qi
Zhang, Yun-Jiao
Shi, Chao
author_facet Song, Wei-Cai
Feng, Qi
Zhang, Yun-Jiao
Shi, Chao
author_sort Song, Wei-Cai
collection PubMed
description The complete chloroplast (cp) genome of Ehrharta erecta was sequenced and assembled for the first time. In this study, The total genome size is 134,511 bp in length and demonstrates a typical quadripartite structure containing a large single copy (LSC, 95,227 bp) and a small single copy (SSC, 12,306 bp), separated by a pair of inverted repeats (IRa, IRb) of 13,489 bp. The G + C content of this chloroplast genome was 38.76%. Gene annotation analysis identified 130 genes including 84 protein-coding genes, 38 transfer RNA, and 8 ribosomal RNA genes. The maximum-likelihood phylogenetic analysis result showed that E. erecta was closely related to O. sativa in the phylogenetic relationship.
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spelling pubmed-81582132021-06-07 The complete chloroplast genome sequence of Ehrharta erecta Lam. (Poaceae) Song, Wei-Cai Feng, Qi Zhang, Yun-Jiao Shi, Chao Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast (cp) genome of Ehrharta erecta was sequenced and assembled for the first time. In this study, The total genome size is 134,511 bp in length and demonstrates a typical quadripartite structure containing a large single copy (LSC, 95,227 bp) and a small single copy (SSC, 12,306 bp), separated by a pair of inverted repeats (IRa, IRb) of 13,489 bp. The G + C content of this chloroplast genome was 38.76%. Gene annotation analysis identified 130 genes including 84 protein-coding genes, 38 transfer RNA, and 8 ribosomal RNA genes. The maximum-likelihood phylogenetic analysis result showed that E. erecta was closely related to O. sativa in the phylogenetic relationship. Taylor & Francis 2021-05-24 /pmc/articles/PMC8158213/ /pubmed/34104759 http://dx.doi.org/10.1080/23802359.2021.1931503 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Song, Wei-Cai
Feng, Qi
Zhang, Yun-Jiao
Shi, Chao
The complete chloroplast genome sequence of Ehrharta erecta Lam. (Poaceae)
title The complete chloroplast genome sequence of Ehrharta erecta Lam. (Poaceae)
title_full The complete chloroplast genome sequence of Ehrharta erecta Lam. (Poaceae)
title_fullStr The complete chloroplast genome sequence of Ehrharta erecta Lam. (Poaceae)
title_full_unstemmed The complete chloroplast genome sequence of Ehrharta erecta Lam. (Poaceae)
title_short The complete chloroplast genome sequence of Ehrharta erecta Lam. (Poaceae)
title_sort complete chloroplast genome sequence of ehrharta erecta lam. (poaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8158213/
https://www.ncbi.nlm.nih.gov/pubmed/34104759
http://dx.doi.org/10.1080/23802359.2021.1931503
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