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Maintaining proper health records improves machine learning predictions for novel 2019-nCoV

BACKGROUND: An ongoing outbreak of a novel coronavirus (2019-nCoV) pneumonia continues to affect the whole world including major countries such as China, USA, Italy, France and the United Kingdom. We present outcome (‘recovered’, ‘isolated’ or ‘death’) risk estimates of 2019-nCoV over ‘early’ datase...

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Autores principales: Khan, Koffka, Ramsahai, Emilie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8159067/
https://www.ncbi.nlm.nih.gov/pubmed/34044839
http://dx.doi.org/10.1186/s12911-021-01537-3
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author Khan, Koffka
Ramsahai, Emilie
author_facet Khan, Koffka
Ramsahai, Emilie
author_sort Khan, Koffka
collection PubMed
description BACKGROUND: An ongoing outbreak of a novel coronavirus (2019-nCoV) pneumonia continues to affect the whole world including major countries such as China, USA, Italy, France and the United Kingdom. We present outcome (‘recovered’, ‘isolated’ or ‘death’) risk estimates of 2019-nCoV over ‘early’ datasets. A major consideration is the likelihood of death for patients with 2019-nCoV. METHOD: Accounting for the impact of the variations in the reporting rate of 2019-nCoV, we used machine learning techniques (AdaBoost, bagging, extra-trees, decision trees and k-nearest neighbour classifiers) on two 2019-nCoV datasets obtained from Kaggle on March 30, 2020. We used ‘country’, ‘age’ and ‘gender’ as features to predict outcome for both datasets. We included the patient’s ‘disease’ history (only present in the second dataset) to predict the outcome for the second dataset. RESULTS: The use of a patient’s ‘disease’ history improves the prediction of ‘death’ by more than sevenfold. The models ignoring a patent’s ‘disease’ history performed poorly in test predictions. CONCLUSION: Our findings indicate the potential of using a patient’s ‘disease’ history as part of the feature set in machine learning techniques to improve 2019-nCoV predictions. This development can have a positive effect on predictive patient treatment and can result in easing currently overburdened healthcare systems worldwide, especially with the increasing prevalence of second and third wave re-infections in some countries.
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spelling pubmed-81590672021-05-28 Maintaining proper health records improves machine learning predictions for novel 2019-nCoV Khan, Koffka Ramsahai, Emilie BMC Med Inform Decis Mak Research Article BACKGROUND: An ongoing outbreak of a novel coronavirus (2019-nCoV) pneumonia continues to affect the whole world including major countries such as China, USA, Italy, France and the United Kingdom. We present outcome (‘recovered’, ‘isolated’ or ‘death’) risk estimates of 2019-nCoV over ‘early’ datasets. A major consideration is the likelihood of death for patients with 2019-nCoV. METHOD: Accounting for the impact of the variations in the reporting rate of 2019-nCoV, we used machine learning techniques (AdaBoost, bagging, extra-trees, decision trees and k-nearest neighbour classifiers) on two 2019-nCoV datasets obtained from Kaggle on March 30, 2020. We used ‘country’, ‘age’ and ‘gender’ as features to predict outcome for both datasets. We included the patient’s ‘disease’ history (only present in the second dataset) to predict the outcome for the second dataset. RESULTS: The use of a patient’s ‘disease’ history improves the prediction of ‘death’ by more than sevenfold. The models ignoring a patent’s ‘disease’ history performed poorly in test predictions. CONCLUSION: Our findings indicate the potential of using a patient’s ‘disease’ history as part of the feature set in machine learning techniques to improve 2019-nCoV predictions. This development can have a positive effect on predictive patient treatment and can result in easing currently overburdened healthcare systems worldwide, especially with the increasing prevalence of second and third wave re-infections in some countries. BioMed Central 2021-05-27 /pmc/articles/PMC8159067/ /pubmed/34044839 http://dx.doi.org/10.1186/s12911-021-01537-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Khan, Koffka
Ramsahai, Emilie
Maintaining proper health records improves machine learning predictions for novel 2019-nCoV
title Maintaining proper health records improves machine learning predictions for novel 2019-nCoV
title_full Maintaining proper health records improves machine learning predictions for novel 2019-nCoV
title_fullStr Maintaining proper health records improves machine learning predictions for novel 2019-nCoV
title_full_unstemmed Maintaining proper health records improves machine learning predictions for novel 2019-nCoV
title_short Maintaining proper health records improves machine learning predictions for novel 2019-nCoV
title_sort maintaining proper health records improves machine learning predictions for novel 2019-ncov
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8159067/
https://www.ncbi.nlm.nih.gov/pubmed/34044839
http://dx.doi.org/10.1186/s12911-021-01537-3
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