Cargando…

Deep Learning Methods for Improving Pollen Monitoring

The risk of pollen-induced allergies can be determined and predicted based on data derived from pollen monitoring. Hirst-type samplers are sensors that allow airborne pollen grains to be detected and their number to be determined. Airborne pollen grains are deposited on adhesive-coated tape, and sli...

Descripción completa

Detalles Bibliográficos
Autores principales: Kubera, Elżbieta, Kubik-Komar, Agnieszka, Piotrowska-Weryszko, Krystyna, Skrzypiec, Magdalena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8159113/
https://www.ncbi.nlm.nih.gov/pubmed/34069411
http://dx.doi.org/10.3390/s21103526
_version_ 1783700012746670080
author Kubera, Elżbieta
Kubik-Komar, Agnieszka
Piotrowska-Weryszko, Krystyna
Skrzypiec, Magdalena
author_facet Kubera, Elżbieta
Kubik-Komar, Agnieszka
Piotrowska-Weryszko, Krystyna
Skrzypiec, Magdalena
author_sort Kubera, Elżbieta
collection PubMed
description The risk of pollen-induced allergies can be determined and predicted based on data derived from pollen monitoring. Hirst-type samplers are sensors that allow airborne pollen grains to be detected and their number to be determined. Airborne pollen grains are deposited on adhesive-coated tape, and slides are then prepared, which require further analysis by specialized personnel. Deep learning can be used to recognize pollen taxa based on microscopic images. This paper presents a method for recognizing a taxon based on microscopic images of pollen grains, allowing the pollen monitoring process to be automated. In this research, a deep CNN (convolutional neural network) model was built from scratch. Publicly available deep neural network models, pre-trained on image data (not including microscopic pictures), were also used. The results show that even a simple deep learning model produces quite good results when the classification of pollen grain taxa is performed directly from the images. The best deep learning model achieved 97.88% accuracy in the difficult task of recognizing three types of pollen grains (birch, alder, and hazel) with similar structures. The derived models can be used to build a system to support pollen monitoring experts in their work.
format Online
Article
Text
id pubmed-8159113
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-81591132021-05-28 Deep Learning Methods for Improving Pollen Monitoring Kubera, Elżbieta Kubik-Komar, Agnieszka Piotrowska-Weryszko, Krystyna Skrzypiec, Magdalena Sensors (Basel) Article The risk of pollen-induced allergies can be determined and predicted based on data derived from pollen monitoring. Hirst-type samplers are sensors that allow airborne pollen grains to be detected and their number to be determined. Airborne pollen grains are deposited on adhesive-coated tape, and slides are then prepared, which require further analysis by specialized personnel. Deep learning can be used to recognize pollen taxa based on microscopic images. This paper presents a method for recognizing a taxon based on microscopic images of pollen grains, allowing the pollen monitoring process to be automated. In this research, a deep CNN (convolutional neural network) model was built from scratch. Publicly available deep neural network models, pre-trained on image data (not including microscopic pictures), were also used. The results show that even a simple deep learning model produces quite good results when the classification of pollen grain taxa is performed directly from the images. The best deep learning model achieved 97.88% accuracy in the difficult task of recognizing three types of pollen grains (birch, alder, and hazel) with similar structures. The derived models can be used to build a system to support pollen monitoring experts in their work. MDPI 2021-05-19 /pmc/articles/PMC8159113/ /pubmed/34069411 http://dx.doi.org/10.3390/s21103526 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kubera, Elżbieta
Kubik-Komar, Agnieszka
Piotrowska-Weryszko, Krystyna
Skrzypiec, Magdalena
Deep Learning Methods for Improving Pollen Monitoring
title Deep Learning Methods for Improving Pollen Monitoring
title_full Deep Learning Methods for Improving Pollen Monitoring
title_fullStr Deep Learning Methods for Improving Pollen Monitoring
title_full_unstemmed Deep Learning Methods for Improving Pollen Monitoring
title_short Deep Learning Methods for Improving Pollen Monitoring
title_sort deep learning methods for improving pollen monitoring
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8159113/
https://www.ncbi.nlm.nih.gov/pubmed/34069411
http://dx.doi.org/10.3390/s21103526
work_keys_str_mv AT kuberaelzbieta deeplearningmethodsforimprovingpollenmonitoring
AT kubikkomaragnieszka deeplearningmethodsforimprovingpollenmonitoring
AT piotrowskaweryszkokrystyna deeplearningmethodsforimprovingpollenmonitoring
AT skrzypiecmagdalena deeplearningmethodsforimprovingpollenmonitoring