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Deep Learning Methods for Improving Pollen Monitoring
The risk of pollen-induced allergies can be determined and predicted based on data derived from pollen monitoring. Hirst-type samplers are sensors that allow airborne pollen grains to be detected and their number to be determined. Airborne pollen grains are deposited on adhesive-coated tape, and sli...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8159113/ https://www.ncbi.nlm.nih.gov/pubmed/34069411 http://dx.doi.org/10.3390/s21103526 |
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author | Kubera, Elżbieta Kubik-Komar, Agnieszka Piotrowska-Weryszko, Krystyna Skrzypiec, Magdalena |
author_facet | Kubera, Elżbieta Kubik-Komar, Agnieszka Piotrowska-Weryszko, Krystyna Skrzypiec, Magdalena |
author_sort | Kubera, Elżbieta |
collection | PubMed |
description | The risk of pollen-induced allergies can be determined and predicted based on data derived from pollen monitoring. Hirst-type samplers are sensors that allow airborne pollen grains to be detected and their number to be determined. Airborne pollen grains are deposited on adhesive-coated tape, and slides are then prepared, which require further analysis by specialized personnel. Deep learning can be used to recognize pollen taxa based on microscopic images. This paper presents a method for recognizing a taxon based on microscopic images of pollen grains, allowing the pollen monitoring process to be automated. In this research, a deep CNN (convolutional neural network) model was built from scratch. Publicly available deep neural network models, pre-trained on image data (not including microscopic pictures), were also used. The results show that even a simple deep learning model produces quite good results when the classification of pollen grain taxa is performed directly from the images. The best deep learning model achieved 97.88% accuracy in the difficult task of recognizing three types of pollen grains (birch, alder, and hazel) with similar structures. The derived models can be used to build a system to support pollen monitoring experts in their work. |
format | Online Article Text |
id | pubmed-8159113 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81591132021-05-28 Deep Learning Methods for Improving Pollen Monitoring Kubera, Elżbieta Kubik-Komar, Agnieszka Piotrowska-Weryszko, Krystyna Skrzypiec, Magdalena Sensors (Basel) Article The risk of pollen-induced allergies can be determined and predicted based on data derived from pollen monitoring. Hirst-type samplers are sensors that allow airborne pollen grains to be detected and their number to be determined. Airborne pollen grains are deposited on adhesive-coated tape, and slides are then prepared, which require further analysis by specialized personnel. Deep learning can be used to recognize pollen taxa based on microscopic images. This paper presents a method for recognizing a taxon based on microscopic images of pollen grains, allowing the pollen monitoring process to be automated. In this research, a deep CNN (convolutional neural network) model was built from scratch. Publicly available deep neural network models, pre-trained on image data (not including microscopic pictures), were also used. The results show that even a simple deep learning model produces quite good results when the classification of pollen grain taxa is performed directly from the images. The best deep learning model achieved 97.88% accuracy in the difficult task of recognizing three types of pollen grains (birch, alder, and hazel) with similar structures. The derived models can be used to build a system to support pollen monitoring experts in their work. MDPI 2021-05-19 /pmc/articles/PMC8159113/ /pubmed/34069411 http://dx.doi.org/10.3390/s21103526 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kubera, Elżbieta Kubik-Komar, Agnieszka Piotrowska-Weryszko, Krystyna Skrzypiec, Magdalena Deep Learning Methods for Improving Pollen Monitoring |
title | Deep Learning Methods for Improving Pollen Monitoring |
title_full | Deep Learning Methods for Improving Pollen Monitoring |
title_fullStr | Deep Learning Methods for Improving Pollen Monitoring |
title_full_unstemmed | Deep Learning Methods for Improving Pollen Monitoring |
title_short | Deep Learning Methods for Improving Pollen Monitoring |
title_sort | deep learning methods for improving pollen monitoring |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8159113/ https://www.ncbi.nlm.nih.gov/pubmed/34069411 http://dx.doi.org/10.3390/s21103526 |
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