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Geometric landscapes for material discovery within energy–structure–function maps

Porous molecular crystals are an emerging class of porous materials formed by crystallisation of molecules with weak intermolecular interactions, which distinguishes them from extended nanoporous materials like metal–organic frameworks (MOFs). To aid discovery of porous molecular crystals for desire...

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Autores principales: Moosavi, Seyed Mohamad, Xu, Henglu, Chen, Linjiang, Cooper, Andrew I., Smit, Berend
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8159328/
https://www.ncbi.nlm.nih.gov/pubmed/34094069
http://dx.doi.org/10.1039/d0sc00049c
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author Moosavi, Seyed Mohamad
Xu, Henglu
Chen, Linjiang
Cooper, Andrew I.
Smit, Berend
author_facet Moosavi, Seyed Mohamad
Xu, Henglu
Chen, Linjiang
Cooper, Andrew I.
Smit, Berend
author_sort Moosavi, Seyed Mohamad
collection PubMed
description Porous molecular crystals are an emerging class of porous materials formed by crystallisation of molecules with weak intermolecular interactions, which distinguishes them from extended nanoporous materials like metal–organic frameworks (MOFs). To aid discovery of porous molecular crystals for desired applications, energy–structure–function (ESF) maps were developed that combine a priori prediction of both the crystal structure and its functional properties. However, it is a challenge to represent the high-dimensional structural and functional landscapes of an ESF map and to identify energetically favourable and functionally interesting polymorphs among the 1000s to 10 000s of structures typically on a single ESF map. Here, we introduce geometric landscapes, a representation for ESF maps based on geometric similarity, quantified by persistent homology. We show that this representation allows the exploration of complex ESF maps, automatically pinpointing interesting crystalline phases available to the molecule. Furthermore, we show that geometric landscapes can serve as an accountable descriptor for porous materials to predict their performance for gas adsorption applications. A machine learning model trained using this geometric similarity could reach a remarkable accuracy in predicting the materials' performance for methane storage applications.
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spelling pubmed-81593282021-06-04 Geometric landscapes for material discovery within energy–structure–function maps Moosavi, Seyed Mohamad Xu, Henglu Chen, Linjiang Cooper, Andrew I. Smit, Berend Chem Sci Chemistry Porous molecular crystals are an emerging class of porous materials formed by crystallisation of molecules with weak intermolecular interactions, which distinguishes them from extended nanoporous materials like metal–organic frameworks (MOFs). To aid discovery of porous molecular crystals for desired applications, energy–structure–function (ESF) maps were developed that combine a priori prediction of both the crystal structure and its functional properties. However, it is a challenge to represent the high-dimensional structural and functional landscapes of an ESF map and to identify energetically favourable and functionally interesting polymorphs among the 1000s to 10 000s of structures typically on a single ESF map. Here, we introduce geometric landscapes, a representation for ESF maps based on geometric similarity, quantified by persistent homology. We show that this representation allows the exploration of complex ESF maps, automatically pinpointing interesting crystalline phases available to the molecule. Furthermore, we show that geometric landscapes can serve as an accountable descriptor for porous materials to predict their performance for gas adsorption applications. A machine learning model trained using this geometric similarity could reach a remarkable accuracy in predicting the materials' performance for methane storage applications. The Royal Society of Chemistry 2020-04-29 /pmc/articles/PMC8159328/ /pubmed/34094069 http://dx.doi.org/10.1039/d0sc00049c Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Moosavi, Seyed Mohamad
Xu, Henglu
Chen, Linjiang
Cooper, Andrew I.
Smit, Berend
Geometric landscapes for material discovery within energy–structure–function maps
title Geometric landscapes for material discovery within energy–structure–function maps
title_full Geometric landscapes for material discovery within energy–structure–function maps
title_fullStr Geometric landscapes for material discovery within energy–structure–function maps
title_full_unstemmed Geometric landscapes for material discovery within energy–structure–function maps
title_short Geometric landscapes for material discovery within energy–structure–function maps
title_sort geometric landscapes for material discovery within energy–structure–function maps
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8159328/
https://www.ncbi.nlm.nih.gov/pubmed/34094069
http://dx.doi.org/10.1039/d0sc00049c
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