Cargando…

Automatic detect lung node with deep learning in segmentation and imbalance data labeling

In this study, a novel method with the U-Net-based network architecture, 2D U-Net, is employed to segment the position of lung nodules, which are an early symptom of lung cancer and have a high probability of becoming a carcinoma, especially when a lung nodule is bigger than 15 [Formula: see text] ....

Descripción completa

Detalles Bibliográficos
Autores principales: Chiu, Ting-Wei, Tsai, Yu-Lin, Su, Shun-Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8160011/
https://www.ncbi.nlm.nih.gov/pubmed/34045563
http://dx.doi.org/10.1038/s41598-021-90599-4
_version_ 1783700194600157184
author Chiu, Ting-Wei
Tsai, Yu-Lin
Su, Shun-Feng
author_facet Chiu, Ting-Wei
Tsai, Yu-Lin
Su, Shun-Feng
author_sort Chiu, Ting-Wei
collection PubMed
description In this study, a novel method with the U-Net-based network architecture, 2D U-Net, is employed to segment the position of lung nodules, which are an early symptom of lung cancer and have a high probability of becoming a carcinoma, especially when a lung nodule is bigger than 15 [Formula: see text] . A serious problem of considering deep learning for all medical images is imbalanced labeling between foreground and background. The lung nodule is the foreground which accounts for a lower percentage in a whole image. The evaluation function adopted in this study is dice coefficient loss, which is usually used in image segmentation tasks. The proposed pre-processing method in this study is to use complementary labeling as the input in U-Net. With this method, the labeling is swapped. The no-nodule position is labeled. And the position of the nodule becomes non-labeled. The result shows that the proposal in this study is efficient in a small quantity of data. This method, complementary labeling could be used in a small data quantity scenario. With the use of ROI segmentation model in the data pre-processing, the results of lung nodule detection can be improved a lot as shown in the experiments.
format Online
Article
Text
id pubmed-8160011
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-81600112021-05-28 Automatic detect lung node with deep learning in segmentation and imbalance data labeling Chiu, Ting-Wei Tsai, Yu-Lin Su, Shun-Feng Sci Rep Article In this study, a novel method with the U-Net-based network architecture, 2D U-Net, is employed to segment the position of lung nodules, which are an early symptom of lung cancer and have a high probability of becoming a carcinoma, especially when a lung nodule is bigger than 15 [Formula: see text] . A serious problem of considering deep learning for all medical images is imbalanced labeling between foreground and background. The lung nodule is the foreground which accounts for a lower percentage in a whole image. The evaluation function adopted in this study is dice coefficient loss, which is usually used in image segmentation tasks. The proposed pre-processing method in this study is to use complementary labeling as the input in U-Net. With this method, the labeling is swapped. The no-nodule position is labeled. And the position of the nodule becomes non-labeled. The result shows that the proposal in this study is efficient in a small quantity of data. This method, complementary labeling could be used in a small data quantity scenario. With the use of ROI segmentation model in the data pre-processing, the results of lung nodule detection can be improved a lot as shown in the experiments. Nature Publishing Group UK 2021-05-27 /pmc/articles/PMC8160011/ /pubmed/34045563 http://dx.doi.org/10.1038/s41598-021-90599-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chiu, Ting-Wei
Tsai, Yu-Lin
Su, Shun-Feng
Automatic detect lung node with deep learning in segmentation and imbalance data labeling
title Automatic detect lung node with deep learning in segmentation and imbalance data labeling
title_full Automatic detect lung node with deep learning in segmentation and imbalance data labeling
title_fullStr Automatic detect lung node with deep learning in segmentation and imbalance data labeling
title_full_unstemmed Automatic detect lung node with deep learning in segmentation and imbalance data labeling
title_short Automatic detect lung node with deep learning in segmentation and imbalance data labeling
title_sort automatic detect lung node with deep learning in segmentation and imbalance data labeling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8160011/
https://www.ncbi.nlm.nih.gov/pubmed/34045563
http://dx.doi.org/10.1038/s41598-021-90599-4
work_keys_str_mv AT chiutingwei automaticdetectlungnodewithdeeplearninginsegmentationandimbalancedatalabeling
AT tsaiyulin automaticdetectlungnodewithdeeplearninginsegmentationandimbalancedatalabeling
AT sushunfeng automaticdetectlungnodewithdeeplearninginsegmentationandimbalancedatalabeling