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Design & development of customizable web API for interoperability of antimicrobial resistance data

Antimicrobial resistance (AMR) is a global health emergency. Complementary to developing new drugs, AMR can be monitored and controlled through cost-effective active surveillance of resistance. As an initiative to monitor resistance, countries all across the globe are collecting data using a variety...

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Autores principales: Kaur, Jasleen, Kaur, Jasmine, Kapoor, Shruti, Singh, Harpreet
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8160260/
https://www.ncbi.nlm.nih.gov/pubmed/34045584
http://dx.doi.org/10.1038/s41598-021-90601-z
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author Kaur, Jasleen
Kaur, Jasmine
Kapoor, Shruti
Singh, Harpreet
author_facet Kaur, Jasleen
Kaur, Jasmine
Kapoor, Shruti
Singh, Harpreet
author_sort Kaur, Jasleen
collection PubMed
description Antimicrobial resistance (AMR) is a global health emergency. Complementary to developing new drugs, AMR can be monitored and controlled through cost-effective active surveillance of resistance. As an initiative to monitor resistance, countries all across the globe are collecting data using a variety of surveillance tools. Moreover, hospitals routinely collect the AMR data for treatment which is being stored in their Laboratory and Hospital Information systems (LIS-HIS). The generated clinical data is collected & stored in various formats, making it very difficult to analyze and generate national reports. To integrate the stored clinical data for predictive modeling and analysis, there is an immediate need for a one-stop data repository capable of importing and exporting data in simple data exchange formats (CSV/Excel). The paper highlights the design & development of i-DIA, a python-based web API to facilitate the interoperability of AMR data by automatically importing the bulk of medical data from CSV files into generic data management and analysis system. The i-DIA has been integrated and tested with the ICMR’s AMR surveillance network on in-house developed software, i-AMRSS. The i-AMRSS is presently collecting data from 31 laboratories across India and i-DIA has been used to import data generated from LIS & HIS of a few hospitals directly into the system. The paper also proposes the complete web-based framework (an extension of i-DIA) integrated with peer-to-peer system architecture.
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spelling pubmed-81602602021-06-01 Design & development of customizable web API for interoperability of antimicrobial resistance data Kaur, Jasleen Kaur, Jasmine Kapoor, Shruti Singh, Harpreet Sci Rep Article Antimicrobial resistance (AMR) is a global health emergency. Complementary to developing new drugs, AMR can be monitored and controlled through cost-effective active surveillance of resistance. As an initiative to monitor resistance, countries all across the globe are collecting data using a variety of surveillance tools. Moreover, hospitals routinely collect the AMR data for treatment which is being stored in their Laboratory and Hospital Information systems (LIS-HIS). The generated clinical data is collected & stored in various formats, making it very difficult to analyze and generate national reports. To integrate the stored clinical data for predictive modeling and analysis, there is an immediate need for a one-stop data repository capable of importing and exporting data in simple data exchange formats (CSV/Excel). The paper highlights the design & development of i-DIA, a python-based web API to facilitate the interoperability of AMR data by automatically importing the bulk of medical data from CSV files into generic data management and analysis system. The i-DIA has been integrated and tested with the ICMR’s AMR surveillance network on in-house developed software, i-AMRSS. The i-AMRSS is presently collecting data from 31 laboratories across India and i-DIA has been used to import data generated from LIS & HIS of a few hospitals directly into the system. The paper also proposes the complete web-based framework (an extension of i-DIA) integrated with peer-to-peer system architecture. Nature Publishing Group UK 2021-05-27 /pmc/articles/PMC8160260/ /pubmed/34045584 http://dx.doi.org/10.1038/s41598-021-90601-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kaur, Jasleen
Kaur, Jasmine
Kapoor, Shruti
Singh, Harpreet
Design & development of customizable web API for interoperability of antimicrobial resistance data
title Design & development of customizable web API for interoperability of antimicrobial resistance data
title_full Design & development of customizable web API for interoperability of antimicrobial resistance data
title_fullStr Design & development of customizable web API for interoperability of antimicrobial resistance data
title_full_unstemmed Design & development of customizable web API for interoperability of antimicrobial resistance data
title_short Design & development of customizable web API for interoperability of antimicrobial resistance data
title_sort design & development of customizable web api for interoperability of antimicrobial resistance data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8160260/
https://www.ncbi.nlm.nih.gov/pubmed/34045584
http://dx.doi.org/10.1038/s41598-021-90601-z
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