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Emulated retinal image capture (ERICA) to test, train and validate processing of retinal images

High resolution retinal imaging systems, such as adaptive optics scanning laser ophthalmoscopes (AOSLO), are increasingly being used for clinical research and fundamental studies in neuroscience. These systems offer unprecedented spatial and temporal resolution of retinal structures in vivo. However...

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Autores principales: Young, Laura K., Smithson, Hannah E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8160341/
https://www.ncbi.nlm.nih.gov/pubmed/34045507
http://dx.doi.org/10.1038/s41598-021-90389-y
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author Young, Laura K.
Smithson, Hannah E.
author_facet Young, Laura K.
Smithson, Hannah E.
author_sort Young, Laura K.
collection PubMed
description High resolution retinal imaging systems, such as adaptive optics scanning laser ophthalmoscopes (AOSLO), are increasingly being used for clinical research and fundamental studies in neuroscience. These systems offer unprecedented spatial and temporal resolution of retinal structures in vivo. However, a major challenge is the development of robust and automated methods for processing and analysing these images. We present ERICA (Emulated Retinal Image CApture), a simulation tool that generates realistic synthetic images of the human cone mosaic, mimicking images that would be captured by an AOSLO, with specified image quality and with corresponding ground-truth data. The simulation includes a self-organising mosaic of photoreceptors, the eye movements an observer might make during image capture, and data capture through a real system incorporating diffraction, residual optical aberrations and noise. The retinal photoreceptor mosaics generated by ERICA have a similar packing geometry to human retina, as determined by expert labelling of AOSLO images of real eyes. In the current implementation ERICA outputs convincingly realistic en face images of the cone photoreceptor mosaic but extensions to other imaging modalities and structures are also discussed. These images and associated ground-truth data can be used to develop, test and validate image processing and analysis algorithms or to train and validate machine learning approaches. The use of synthetic images has the advantage that neither access to an imaging system, nor to human participants is necessary for development.
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spelling pubmed-81603412021-06-01 Emulated retinal image capture (ERICA) to test, train and validate processing of retinal images Young, Laura K. Smithson, Hannah E. Sci Rep Article High resolution retinal imaging systems, such as adaptive optics scanning laser ophthalmoscopes (AOSLO), are increasingly being used for clinical research and fundamental studies in neuroscience. These systems offer unprecedented spatial and temporal resolution of retinal structures in vivo. However, a major challenge is the development of robust and automated methods for processing and analysing these images. We present ERICA (Emulated Retinal Image CApture), a simulation tool that generates realistic synthetic images of the human cone mosaic, mimicking images that would be captured by an AOSLO, with specified image quality and with corresponding ground-truth data. The simulation includes a self-organising mosaic of photoreceptors, the eye movements an observer might make during image capture, and data capture through a real system incorporating diffraction, residual optical aberrations and noise. The retinal photoreceptor mosaics generated by ERICA have a similar packing geometry to human retina, as determined by expert labelling of AOSLO images of real eyes. In the current implementation ERICA outputs convincingly realistic en face images of the cone photoreceptor mosaic but extensions to other imaging modalities and structures are also discussed. These images and associated ground-truth data can be used to develop, test and validate image processing and analysis algorithms or to train and validate machine learning approaches. The use of synthetic images has the advantage that neither access to an imaging system, nor to human participants is necessary for development. Nature Publishing Group UK 2021-05-27 /pmc/articles/PMC8160341/ /pubmed/34045507 http://dx.doi.org/10.1038/s41598-021-90389-y Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Young, Laura K.
Smithson, Hannah E.
Emulated retinal image capture (ERICA) to test, train and validate processing of retinal images
title Emulated retinal image capture (ERICA) to test, train and validate processing of retinal images
title_full Emulated retinal image capture (ERICA) to test, train and validate processing of retinal images
title_fullStr Emulated retinal image capture (ERICA) to test, train and validate processing of retinal images
title_full_unstemmed Emulated retinal image capture (ERICA) to test, train and validate processing of retinal images
title_short Emulated retinal image capture (ERICA) to test, train and validate processing of retinal images
title_sort emulated retinal image capture (erica) to test, train and validate processing of retinal images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8160341/
https://www.ncbi.nlm.nih.gov/pubmed/34045507
http://dx.doi.org/10.1038/s41598-021-90389-y
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