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A unified and flexible modelling framework for the analysis of malaria serology data

Serology data are an increasingly important tool in malaria surveillance, especially in low transmission settings where the estimation of parasite-based indicators is often problematic. Existing methods rely on the use of thresholds to identify seropositive individuals and estimate transmission inte...

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Detalles Bibliográficos
Autores principales: Kyomuhangi, Irene, Giorgi, Emanuele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cambridge University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161365/
https://www.ncbi.nlm.nih.gov/pubmed/33843523
http://dx.doi.org/10.1017/S0950268821000753
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author Kyomuhangi, Irene
Giorgi, Emanuele
author_facet Kyomuhangi, Irene
Giorgi, Emanuele
author_sort Kyomuhangi, Irene
collection PubMed
description Serology data are an increasingly important tool in malaria surveillance, especially in low transmission settings where the estimation of parasite-based indicators is often problematic. Existing methods rely on the use of thresholds to identify seropositive individuals and estimate transmission intensity, while making assumptions about the temporal dynamics of malaria transmission that are rarely questioned. Here, we present a novel threshold-free approach for the analysis of malaria serology data which avoids dichotomization of continuous antibody measurements and allows us to model changes in the antibody distribution across age in a more flexible way. The proposed unified mechanistic model combines the properties of reversible catalytic and antibody acquisition models, and allows for temporally varying boosting and seroconversion rates. Additionally, as an alternative to the unified mechanistic model, we also propose an empirical approach to analysis where modelling of the age-dependency is informed by the data rather than biological assumptions. Using serology data from Western Kenya, we demonstrate both the usefulness and limitations of the novel modelling framework.
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spelling pubmed-81613652021-06-07 A unified and flexible modelling framework for the analysis of malaria serology data Kyomuhangi, Irene Giorgi, Emanuele Epidemiol Infect Original Paper Serology data are an increasingly important tool in malaria surveillance, especially in low transmission settings where the estimation of parasite-based indicators is often problematic. Existing methods rely on the use of thresholds to identify seropositive individuals and estimate transmission intensity, while making assumptions about the temporal dynamics of malaria transmission that are rarely questioned. Here, we present a novel threshold-free approach for the analysis of malaria serology data which avoids dichotomization of continuous antibody measurements and allows us to model changes in the antibody distribution across age in a more flexible way. The proposed unified mechanistic model combines the properties of reversible catalytic and antibody acquisition models, and allows for temporally varying boosting and seroconversion rates. Additionally, as an alternative to the unified mechanistic model, we also propose an empirical approach to analysis where modelling of the age-dependency is informed by the data rather than biological assumptions. Using serology data from Western Kenya, we demonstrate both the usefulness and limitations of the novel modelling framework. Cambridge University Press 2021-04-12 /pmc/articles/PMC8161365/ /pubmed/33843523 http://dx.doi.org/10.1017/S0950268821000753 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Paper
Kyomuhangi, Irene
Giorgi, Emanuele
A unified and flexible modelling framework for the analysis of malaria serology data
title A unified and flexible modelling framework for the analysis of malaria serology data
title_full A unified and flexible modelling framework for the analysis of malaria serology data
title_fullStr A unified and flexible modelling framework for the analysis of malaria serology data
title_full_unstemmed A unified and flexible modelling framework for the analysis of malaria serology data
title_short A unified and flexible modelling framework for the analysis of malaria serology data
title_sort unified and flexible modelling framework for the analysis of malaria serology data
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161365/
https://www.ncbi.nlm.nih.gov/pubmed/33843523
http://dx.doi.org/10.1017/S0950268821000753
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