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A unified and flexible modelling framework for the analysis of malaria serology data
Serology data are an increasingly important tool in malaria surveillance, especially in low transmission settings where the estimation of parasite-based indicators is often problematic. Existing methods rely on the use of thresholds to identify seropositive individuals and estimate transmission inte...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cambridge University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161365/ https://www.ncbi.nlm.nih.gov/pubmed/33843523 http://dx.doi.org/10.1017/S0950268821000753 |
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author | Kyomuhangi, Irene Giorgi, Emanuele |
author_facet | Kyomuhangi, Irene Giorgi, Emanuele |
author_sort | Kyomuhangi, Irene |
collection | PubMed |
description | Serology data are an increasingly important tool in malaria surveillance, especially in low transmission settings where the estimation of parasite-based indicators is often problematic. Existing methods rely on the use of thresholds to identify seropositive individuals and estimate transmission intensity, while making assumptions about the temporal dynamics of malaria transmission that are rarely questioned. Here, we present a novel threshold-free approach for the analysis of malaria serology data which avoids dichotomization of continuous antibody measurements and allows us to model changes in the antibody distribution across age in a more flexible way. The proposed unified mechanistic model combines the properties of reversible catalytic and antibody acquisition models, and allows for temporally varying boosting and seroconversion rates. Additionally, as an alternative to the unified mechanistic model, we also propose an empirical approach to analysis where modelling of the age-dependency is informed by the data rather than biological assumptions. Using serology data from Western Kenya, we demonstrate both the usefulness and limitations of the novel modelling framework. |
format | Online Article Text |
id | pubmed-8161365 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Cambridge University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-81613652021-06-07 A unified and flexible modelling framework for the analysis of malaria serology data Kyomuhangi, Irene Giorgi, Emanuele Epidemiol Infect Original Paper Serology data are an increasingly important tool in malaria surveillance, especially in low transmission settings where the estimation of parasite-based indicators is often problematic. Existing methods rely on the use of thresholds to identify seropositive individuals and estimate transmission intensity, while making assumptions about the temporal dynamics of malaria transmission that are rarely questioned. Here, we present a novel threshold-free approach for the analysis of malaria serology data which avoids dichotomization of continuous antibody measurements and allows us to model changes in the antibody distribution across age in a more flexible way. The proposed unified mechanistic model combines the properties of reversible catalytic and antibody acquisition models, and allows for temporally varying boosting and seroconversion rates. Additionally, as an alternative to the unified mechanistic model, we also propose an empirical approach to analysis where modelling of the age-dependency is informed by the data rather than biological assumptions. Using serology data from Western Kenya, we demonstrate both the usefulness and limitations of the novel modelling framework. Cambridge University Press 2021-04-12 /pmc/articles/PMC8161365/ /pubmed/33843523 http://dx.doi.org/10.1017/S0950268821000753 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Paper Kyomuhangi, Irene Giorgi, Emanuele A unified and flexible modelling framework for the analysis of malaria serology data |
title | A unified and flexible modelling framework for the analysis of malaria serology data |
title_full | A unified and flexible modelling framework for the analysis of malaria serology data |
title_fullStr | A unified and flexible modelling framework for the analysis of malaria serology data |
title_full_unstemmed | A unified and flexible modelling framework for the analysis of malaria serology data |
title_short | A unified and flexible modelling framework for the analysis of malaria serology data |
title_sort | unified and flexible modelling framework for the analysis of malaria serology data |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161365/ https://www.ncbi.nlm.nih.gov/pubmed/33843523 http://dx.doi.org/10.1017/S0950268821000753 |
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