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Discovering Relationships between OSDAs and Zeolites through Data Mining and Generative Neural Networks

[Image: see text] Organic structure directing agents (OSDAs) play a crucial role in the synthesis of micro- and mesoporous materials especially in the case of zeolites. Despite the wide use of OSDAs, their interaction with zeolite frameworks is poorly understood, with researchers relying on synthesi...

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Autores principales: Jensen, Zach, Kwon, Soonhyoung, Schwalbe-Koda, Daniel, Paris, Cecilia, Gómez-Bombarelli, Rafael, Román-Leshkov, Yuriy, Corma, Avelino, Moliner, Manuel, Olivetti, Elsa A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161479/
https://www.ncbi.nlm.nih.gov/pubmed/34079901
http://dx.doi.org/10.1021/acscentsci.1c00024
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author Jensen, Zach
Kwon, Soonhyoung
Schwalbe-Koda, Daniel
Paris, Cecilia
Gómez-Bombarelli, Rafael
Román-Leshkov, Yuriy
Corma, Avelino
Moliner, Manuel
Olivetti, Elsa A.
author_facet Jensen, Zach
Kwon, Soonhyoung
Schwalbe-Koda, Daniel
Paris, Cecilia
Gómez-Bombarelli, Rafael
Román-Leshkov, Yuriy
Corma, Avelino
Moliner, Manuel
Olivetti, Elsa A.
author_sort Jensen, Zach
collection PubMed
description [Image: see text] Organic structure directing agents (OSDAs) play a crucial role in the synthesis of micro- and mesoporous materials especially in the case of zeolites. Despite the wide use of OSDAs, their interaction with zeolite frameworks is poorly understood, with researchers relying on synthesis heuristics or computationally expensive techniques to predict whether an organic molecule can act as an OSDA for a certain zeolite. In this paper, we undertake a data-driven approach to unearth generalized OSDA–zeolite relationships using a comprehensive database comprising of 5,663 synthesis routes for porous materials. To generate this comprehensive database, we use natural language processing and text mining techniques to extract OSDAs, zeolite phases, and gel chemistry from the scientific literature published between 1966 and 2020. Through structural featurization of the OSDAs using weighted holistic invariant molecular (WHIM) descriptors, we relate OSDAs described in the literature to different types of cage-based, small-pore zeolites. Lastly, we adapt a generative neural network capable of suggesting new molecules as potential OSDAs for a given zeolite structure and gel chemistry. We apply this model to CHA and SFW zeolites generating several alternative OSDA candidates to those currently used in practice. These molecules are further vetted with molecular mechanics simulations to show the model generates physically meaningful predictions. Our model can automatically explore the OSDA space, reducing the amount of simulation or experimentation needed to find new OSDA candidates.
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spelling pubmed-81614792021-06-01 Discovering Relationships between OSDAs and Zeolites through Data Mining and Generative Neural Networks Jensen, Zach Kwon, Soonhyoung Schwalbe-Koda, Daniel Paris, Cecilia Gómez-Bombarelli, Rafael Román-Leshkov, Yuriy Corma, Avelino Moliner, Manuel Olivetti, Elsa A. ACS Cent Sci [Image: see text] Organic structure directing agents (OSDAs) play a crucial role in the synthesis of micro- and mesoporous materials especially in the case of zeolites. Despite the wide use of OSDAs, their interaction with zeolite frameworks is poorly understood, with researchers relying on synthesis heuristics or computationally expensive techniques to predict whether an organic molecule can act as an OSDA for a certain zeolite. In this paper, we undertake a data-driven approach to unearth generalized OSDA–zeolite relationships using a comprehensive database comprising of 5,663 synthesis routes for porous materials. To generate this comprehensive database, we use natural language processing and text mining techniques to extract OSDAs, zeolite phases, and gel chemistry from the scientific literature published between 1966 and 2020. Through structural featurization of the OSDAs using weighted holistic invariant molecular (WHIM) descriptors, we relate OSDAs described in the literature to different types of cage-based, small-pore zeolites. Lastly, we adapt a generative neural network capable of suggesting new molecules as potential OSDAs for a given zeolite structure and gel chemistry. We apply this model to CHA and SFW zeolites generating several alternative OSDA candidates to those currently used in practice. These molecules are further vetted with molecular mechanics simulations to show the model generates physically meaningful predictions. Our model can automatically explore the OSDA space, reducing the amount of simulation or experimentation needed to find new OSDA candidates. American Chemical Society 2021-04-16 2021-05-26 /pmc/articles/PMC8161479/ /pubmed/34079901 http://dx.doi.org/10.1021/acscentsci.1c00024 Text en © 2021 The Authors. Published by American Chemical Society Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Jensen, Zach
Kwon, Soonhyoung
Schwalbe-Koda, Daniel
Paris, Cecilia
Gómez-Bombarelli, Rafael
Román-Leshkov, Yuriy
Corma, Avelino
Moliner, Manuel
Olivetti, Elsa A.
Discovering Relationships between OSDAs and Zeolites through Data Mining and Generative Neural Networks
title Discovering Relationships between OSDAs and Zeolites through Data Mining and Generative Neural Networks
title_full Discovering Relationships between OSDAs and Zeolites through Data Mining and Generative Neural Networks
title_fullStr Discovering Relationships between OSDAs and Zeolites through Data Mining and Generative Neural Networks
title_full_unstemmed Discovering Relationships between OSDAs and Zeolites through Data Mining and Generative Neural Networks
title_short Discovering Relationships between OSDAs and Zeolites through Data Mining and Generative Neural Networks
title_sort discovering relationships between osdas and zeolites through data mining and generative neural networks
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161479/
https://www.ncbi.nlm.nih.gov/pubmed/34079901
http://dx.doi.org/10.1021/acscentsci.1c00024
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