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An 8-gene DNA methylation signature predicts the recurrence risk of cervical cancer
OBJECTIVE: This study examined the predictive utility of DNA methylation for cervical cancer recurrence. METHODS: DNA methylation and RNA expression data for patients with cervical cancer were downloaded from The Cancer Genome Atlas. Differentially methylated genes (DMGs) and differentially expresse...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161886/ https://www.ncbi.nlm.nih.gov/pubmed/34034542 http://dx.doi.org/10.1177/03000605211018443 |
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author | Ma, Jing-Hang Huang, Yu Liu, Lu-Yao Feng, Zhen |
author_facet | Ma, Jing-Hang Huang, Yu Liu, Lu-Yao Feng, Zhen |
author_sort | Ma, Jing-Hang |
collection | PubMed |
description | OBJECTIVE: This study examined the predictive utility of DNA methylation for cervical cancer recurrence. METHODS: DNA methylation and RNA expression data for patients with cervical cancer were downloaded from The Cancer Genome Atlas. Differentially methylated genes (DMGs) and differentially expressed genes were screened and extracted via correlation analysis. A support vector machine (SVM)-based recurrence prediction model was established using the selected DMGs. Cox regression analysis and receiver operating characteristic curve analysis were used for self-evaluation. The Gene Expression Omnibus (GEO) database was applied for external validation. Functional enrichment was determined using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses. RESULTS: An eight-gene DNA methylation signature identified patients with a high risk of recurrence (area under the curve = 0.833). The SVM score was an independent risk factor for recurrence (hazard ratio [HR] = 0.418; 95% confidence interval [CI] = 0.26–0.67). The independent GEO database analysis further supported the result. CONCLUSION: An eight-gene DNA methylation signature predictive of cervical cancer recurrence was identified in this study, and this signature may help identify patients at high risk of recurrence and improve clinical treatment. |
format | Online Article Text |
id | pubmed-8161886 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-81618862021-06-07 An 8-gene DNA methylation signature predicts the recurrence risk of cervical cancer Ma, Jing-Hang Huang, Yu Liu, Lu-Yao Feng, Zhen J Int Med Res Pre-Clinical Research Report OBJECTIVE: This study examined the predictive utility of DNA methylation for cervical cancer recurrence. METHODS: DNA methylation and RNA expression data for patients with cervical cancer were downloaded from The Cancer Genome Atlas. Differentially methylated genes (DMGs) and differentially expressed genes were screened and extracted via correlation analysis. A support vector machine (SVM)-based recurrence prediction model was established using the selected DMGs. Cox regression analysis and receiver operating characteristic curve analysis were used for self-evaluation. The Gene Expression Omnibus (GEO) database was applied for external validation. Functional enrichment was determined using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses. RESULTS: An eight-gene DNA methylation signature identified patients with a high risk of recurrence (area under the curve = 0.833). The SVM score was an independent risk factor for recurrence (hazard ratio [HR] = 0.418; 95% confidence interval [CI] = 0.26–0.67). The independent GEO database analysis further supported the result. CONCLUSION: An eight-gene DNA methylation signature predictive of cervical cancer recurrence was identified in this study, and this signature may help identify patients at high risk of recurrence and improve clinical treatment. SAGE Publications 2021-05-25 /pmc/articles/PMC8161886/ /pubmed/34034542 http://dx.doi.org/10.1177/03000605211018443 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by-nc/4.0/Creative Commons Non Commercial CC BY-NC: This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Pre-Clinical Research Report Ma, Jing-Hang Huang, Yu Liu, Lu-Yao Feng, Zhen An 8-gene DNA methylation signature predicts the recurrence risk of cervical cancer |
title | An 8-gene DNA methylation signature predicts the recurrence risk of cervical cancer |
title_full | An 8-gene DNA methylation signature predicts the recurrence risk of cervical cancer |
title_fullStr | An 8-gene DNA methylation signature predicts the recurrence risk of cervical cancer |
title_full_unstemmed | An 8-gene DNA methylation signature predicts the recurrence risk of cervical cancer |
title_short | An 8-gene DNA methylation signature predicts the recurrence risk of cervical cancer |
title_sort | 8-gene dna methylation signature predicts the recurrence risk of cervical cancer |
topic | Pre-Clinical Research Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161886/ https://www.ncbi.nlm.nih.gov/pubmed/34034542 http://dx.doi.org/10.1177/03000605211018443 |
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